Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4511g00010 ATGACACGCACGCTGAGAATTCTCAAATCCACGGACAACGCCACAGCCATGATAGCTGCGGCGCCACCGCCGGAGGCCGTGGCTTTGGAGTCAGATTTCGTGGTGATTCTGGCAGCCCTTCTCTGCGCCCTCATATGTGTAGTGGGACTCGTCGCCGTCGCCCGCTGCGCGTGGCTCCGGCGAGGTACCGGCACCGGCGGAAGCTCTCCTCGGCAAGCTTTGGCGAACAAGGGCCTGAAGAAGAAGGTGCTCCAGTCGCTGCCAAAGTTCGCTTACGTCGACAGCAACCCGAGCAAGTGGGTTGCCACGCCGGAATGCGCGATTTGTTTGTCGGATTTCGCCGCCGGCGACGAGATCCGGGTGCTGCCGCAGTGTGGGCATGGGTTTCACGTGGGCTGCATAGACACGTGGCTTGGGTCCCACTCGTCGTGCCCTTCGTGTCGGCAGGTTCTGGTGGGTGTGACGAGGTGCCAGAAGTGCGGGCGGTTCCCGGCGGCGAGCGGCGGAGCCACCAGAATGGCGGTTAGTGAACCTGAATTGAAGTCCAGAGAAGACAATGCTGCTGCTAGTAATAATAATATTAACGGCGGTAGTTGTAGTAACAGTAACAGTGGGTTCTTGCCTTGA 627 0.5965 MTRTLRILKSTDNATAMIAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLRRGTGTGGSSPRQALANKGLKKKVLQSLPKFAYVDSNPSKWVATPECAICLSDFAAGDEIRVLPQCGHGFHVGCIDTWLGSHSSCPSCRQVLVGVTRCQKCGRFPAASGGATRMAVSEPELKSREDNAAASNNNINGGSCSNSNSGFLP 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4511g00010 208 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Gabi4511g00010 208 SMART ring_2 106 147 IPR001841 -
Gabi4511g00010 208 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 22 161 - -
Gabi4511g00010 208 CDD RING-H2_EL5-like 105 148 - -
Gabi4511g00010 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 152 IPR013083 -
Gabi4511g00010 208 FunFam E3 ubiquitin-protein ligase ATL6 68 153 - -
Gabi4511g00010 208 Pfam Ring finger domain 105 148 IPR001841 -
Gabi4511g00010 208 SUPERFAMILY RING/U-box 84 159 - -
Gabi4511g00010 208 MobiDBLite consensus disorder prediction 172 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4511g00010 Gabi-Chr4511 99375 100602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4511g00010 1 185 C3H Transcription Factor Family AT1G76410 56.250 3.79e-62 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4511g00010 - - gmx:100787383 298.901