Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4510g00006 ATGTTGCACTGTCTCAACACTTCGGGGAATCTAGGAGGGAGCTGTTCGGACATGACAGTGTTGGAAAGACAAAGGGCGAAGAGGAAGTGGCAACAAGAACACGCTGAGTTTAACGGTATCTTCTCTTCTTCAATGCAAGTTCAGAATCCTCATGGCTTGGTCATGATGGGTTGTGATTCCGCGCTTGCTGAGGTCGTAGCTCACTCAATGAAGCCCGACCCGGGTTTTGAAAATGGGTGGCCCGAATTGGGATTCGGGTCTTCTTCTTCTTCTGGGTTAGTACCTTCTTCTGCGTTTGACGTGAAATCTGCAAGTCCACGTGGCAGAGACTTGGTTTCAGAGACGGAGAAGATGGTAAGCTCGCCATGTAAAGAAAACTTCAAGAAGAGGAAAGCTGATAAGGCTCAGAATTCCAAGGTTGTTGCAGAGAGTGATAACAAGGACAAGGGAATCAAAGTAAGTGCTGACGAAGGGGAATCCAAAATCACGGAACAAACAAGCAACAAGAATACCAAGTGTAACACAAATAGAAACAACAGAGAAACTTCTGCAGATACTTCAAAGGAAAATTCAAAAGGGTCTGAGGTTCAAAATCAAAAGCTTGAATACATTCATGTCCGAGCACGTCGTGGTCAAGCCACTGATAGTCATAGCTTAGCCGAAAGAGTTAGAAGGGAAAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCTGGTTGCAACAAAGTTGCAGGAAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAACGACAAGTTGAGTTCTTGTCAATGAAATTAGCTGCTGTAAACCCAAGACTTGACATCAACATTGATGAACTGTTTGCCAAAGAGGTTTTTCCTGCTTGTGCTCAAAGTTTTCCATCCATAGGGATGCAATCAGACATGACTACTAACCCATCTTATCTCCAGTTTAATTCAGCACAACAACTTGTTTCATGTTGTGGTGGATTAATAAATAATATGGGGACAAGCACTCCGGATATGGGGTTTCGAAGAAACATTAATGTTCCTGTATCTTTGCCCGAAACATTTCTTGACTCATCCTGTTTCAATCAAATTTTACCCTCCTCAACTTGGGAAGGTGATTTCCAAAACCTTTACAATGTGACTTTTGATCAAGGGCCAACAACATCTTTTCCTTCTCAGCCATTTACAGGTCTAGTTGAAGCTAGAAATCTAAAGATGGAGATGTAG 1236 0.4199 MLHCLNTSGNLGGSCSDMTVLERQRAKRKWQQEHAEFNGIFSSSMQVQNPHGLVMMGCDSALAEVVAHSMKPDPGFENGWPELGFGSSSSSGLVPSSAFDVKSASPRGRDLVSETEKMVSSPCKENFKKRKADKAQNSKVVAESDNKDKGIKVSADEGESKITEQTSNKNTKCNTNRNNRETSADTSKENSKGSEVQNQKLEYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDINIDELFAKEVFPACAQSFPSIGMQSDMTTNPSYLQFNSAQQLVSCCGGLINNMGTSTPDMGFRRNINVPVSLPETFLDSSCFNQILPSSTWEGDFQNLYNVTFDQGPTTSFPSQPFTGLVEARNLKMEM 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4510g00006 411 CDD bHLH_AtBPE_like 202 287 - -
Gabi4510g00006 411 FunFam Basic helix-loop-helix transcription factor 209 281 - -
Gabi4510g00006 411 Pfam Helix-loop-helix DNA-binding domain 216 263 IPR011598 GO:0046983
Gabi4510g00006 411 SMART finulus 218 268 IPR011598 GO:0046983
Gabi4510g00006 411 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 262 IPR011598 GO:0046983
Gabi4510g00006 411 MobiDBLite consensus disorder prediction 164 181 - -
Gabi4510g00006 411 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 280 IPR036638 GO:0046983
Gabi4510g00006 411 MobiDBLite consensus disorder prediction 94 199 - -
Gabi4510g00006 411 MobiDBLite consensus disorder prediction 121 163 - -
Gabi4510g00006 411 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 121 319 IPR024097 GO:0006355
Gabi4510g00006 411 Gene3D - 209 283 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4510g00006 Gabi-Chr4510 29174 32338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4510g00006 9 381 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 37.436 3.85e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4510g00006 HLH 2.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4510g00006 - - gmx:100794256 551.206