Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4508g00009 ATGCCAGTGAGGAAGTATTACTGCGATTATTGCGACAAGCAATTCCAAGACACAACAGCGGATCGGAAACGACACGTTCGAGGTATTCAGCATCAACAAGCCAAAGCTCGTTGGTACGATTCCTTCAAACTCCAACACCAACAACCTATTCCCCCACCTAAACCCCTCTGCTTTCACTTCCTCAACACGGGATTTTGCCGTTACGGCGACTCTTGCAAATACATTCATCCCAATGCCCCCAACAACATGCAGCAGCCACAACCTATAATATCAACTCCACCAATTGGGAATGTGGTACGAGATAGTATGGGAGTGTCATGGGGAAATCTACCACCATCGCTGCAGCCTCCACCTGAGGGTGGCTATCCCCACCTTCCCTTTGTGGATTGGGGATAG 396 0.4924 MPVRKYYCDYCDKQFQDTTADRKRHVRGIQHQQAKARWYDSFKLQHQQPIPPPKPLCFHFLNTGFCRYGDSCKYIHPNAPNNMQQPQPIISTPPIGNVVRDSMGVSWGNLPPSLQPPPEGGYPHLPFVDWG 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4508g00009 131 Gene3D Classic Zinc Finger 3 51 - -
Gabi4508g00009 131 ProSiteProfiles Zinc finger C3H1-type profile. 51 79 IPR000571 GO:0046872
Gabi4508g00009 131 Gene3D - 52 101 - -
Gabi4508g00009 131 SMART c3hfinal6 52 78 IPR000571 GO:0046872
Gabi4508g00009 131 SUPERFAMILY CCCH zinc finger 54 78 IPR036855 GO:0046872
Gabi4508g00009 131 SUPERFAMILY beta-beta-alpha zinc fingers 4 48 IPR036236 -
Gabi4508g00009 131 PANTHER NUCLEASE-RELATED 1 131 - -
Gabi4508g00009 131 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 77 IPR000571 GO:0046872
Gabi4508g00009 131 Pfam U1 zinc finger 4 39 IPR013085 GO:0008270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4508g00009 zf-U1 4.4e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4508g00009 K13152 - gmx:100527203 199.134