LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4507g00007	ATGGCCAACAATGGTGTAAAGGAGCCCTTGCTGTCAGACTCACTGGATCCGGCAGCTCGAAAGGCTTTAAGACAGTTAAACAAGAGAAGGTTCCGCCGTTGTAGAAGTGCTCCTCCCACAGATCTTGATATTCCTGAGACAAATGGCAATATATCCACTCCCCGTTCTGAGTCCATATTTGGGAATATACATCCAAGCTTTAAAGAAGTGGCAACATGCCTTGCAGTCTATTTAGGTGTAGGTGTTATAATCTTCTACCTTTGCAGGGACCAGATCAAGGGGCAGAAAACAGACAGAATTCTTGATGCTTTATACTTTACAATCGTGACAATGACCACTGTTGGATACGGAGATCTTGTGCCAAATAGTGACCTTACAAAACTACTCGCCTGTGCTTTTGTTTTCTCTGGAATGGCAGTGGGTGCACTAATCCTAAGCAAAGCAGCAGACTTCTTGGTTGAGAAACAGGAAGTTTTGCTAGTTAAAGCTATGCATATGCACATGCGCCAAAAAGTTGGTCCAGCTGAAATTTTAAAGGAGATTGAGATCAATAAAACAAGATACAAACTTTTTCTGGTCTTTTTCCTTCTTTTGATTATCATTATTTTGGGGACAATTTTCTTGGTCACGGTTGAGAAATTGGAAATTATAGATGCCTTCTACTGTGTTTGTTCTACAATTACAACCCTGGGTTATGGGGATAAAAGTTTCTCAACTCAAGCAGGAAGAATATTTGCCCTTTTTTGGATATTAACAGGTACTGTTTGTGTAGCTCAGTTTTTCCTCTACATTGCTGAGCTAAGCACTGAAAGCAGACAAAAGGCACTCGTCAAGTGGGTTCTTACAAGGAAGATGACCAATTTAGATTTGGAGGCTGCAGATCTTGATGACGATGGGAGTGTTGGGGCTACTGAATTCATTATTTATAAGCTGAAAGAGATGGGGAAGATTAGTCAAGAAGATATATCACTTGTGATGAAGGAGTTTGAAGAGCTTGACGTTGATCAGTCTGGTACACTTTCAAGTTCTGATATAACACTTGCTCAGTCATCTTAG	1056	0.4062	MANNGVKEPLLSDSLDPAARKALRQLNKRRFRRCRSAPPTDLDIPETNGNISTPRSESIFGNIHPSFKEVATCLAVYLGVGVIIFYLCRDQIKGQKTDRILDALYFTIVTMTTVGYGDLVPNSDLTKLLACAFVFSGMAVGALILSKAADFLVEKQEVLLVKAMHMHMRQKVGPAEILKEIEINKTRYKLFLVFFLLLIIIILGTIFLVTVEKLEIIDAFYCVCSTITTLGYGDKSFSTQAGRIFALFWILTGTVCVAQFFLYIAELSTESRQKALVKWVLTRKMTNLDLEAADLDDDGSVGATEFIIYKLKEMGKISQEDISLVMKEFEELDVDQSGTLSSSDITLAQSS	351

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4507g00007	351	Gene3D	-	64	158	-	-
	Gabi4507g00007	351	Pfam	Ion channel	196	267	IPR013099	-
	Gabi4507g00007	351	Pfam	Ion channel	73	153	IPR013099	-
	Gabi4507g00007	351	SUPERFAMILY	Voltage-gated potassium channels	72	163	-	-
	Gabi4507g00007	351	PRINTS	Two pore domain K+ channel signature	228	237	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Gabi4507g00007	351	PRINTS	Two pore domain K+ channel signature	109	137	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Gabi4507g00007	351	SUPERFAMILY	EF-hand	283	346	IPR011992	-
	Gabi4507g00007	351	ProSitePatterns	EF-hand calcium-binding domain.	333	345	IPR018247	-
	Gabi4507g00007	351	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	72	323	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Gabi4507g00007	351	FunFam	Two-pore potassium channel 1	170	278	-	-
	Gabi4507g00007	351	SUPERFAMILY	Voltage-gated potassium channels	183	285	-	-
	Gabi4507g00007	351	Gene3D	-	174	279	-	-
	Gabi4507g00007	351	FunFam	Calcium-activated outward-rectifying potassium channel 1	64	159	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4507g00007	Gabi-Chr4507	51412	54611	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4507g00007	54	351	Ion Channels	AT5G55630	63.423	1.19e-142	406

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4507g00007	K05389		-	gmx:100777388	501.901