Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4507g00001 ATGAGGTTATCATTTTTTCAAGTTTTGCATTTGGTTTTTCCAGTTTTGTTGTTGGTGTGTTTTCAGGCGGTGCAAGGTGTTAGTGGCAATACTAGAAACTTCATTACATGGGATGACTTCATAGTGGATGAGCACAGTCTCTCCTCCGCTGTTAGTGGTAGAGTTATTGTGGTAGATCAAAGTGGTAACGGAGATTCACCAACTGTTCAAGGGGCTGTTGATATGATTCCAGAAGACAATACAGAAAGAGTGAAGATATATATTTATCCAGGAACTTACAGAGAACGAGTGCACGTGCCGAGAAGCAAGCCGTTTATTTCATTTATAGGTAAACCTAACATAACAGTCAATGGCAATGAACTAAATGTAACGGCCAATGGCAATGCACTAAATGTAACAGACATTGCCAATGCCATACCTATTATTACAAATAGTACTAAGGCCTCAGACAAAGGCTCAGATGGGCAAGAAATGGGAACAGATAGTACAGCAACTGTATGGGTAGAATCTGATTTCTTCTGTGCAACAACTCTTACTATTGAGAATTTGGTAGGTAAAGATGAAGATAAACGCCAAGCAGTAGCGTTGCGTGTAGATGGGGATAAAGTTGTATTCTACCGAGTTAGGCTTGTGGGGGAACAGGACACTCTCCTAGATAACAATGGAACCCATTATTTCTACCGAAGTTACATTCAAGGATCCGTTGACTTTATATGTGGCAATGCAAAATCATTGTTCCATGAGTGTTTACTATACTCTGTGGCTGGGTTTTGGGGAGCAATTGCAGCTCATCACAGGGATTCAGCAGATGAAGATACCGGATTTTCATTTGTTGGTTGCACAATTAATGGAACCGGTAGTATCTTCCTTGGGAGAGCTTGGGGGGAATATGCAACGACAATATATTCATACTGTGTCATGGACGATATCATTAACCCCATTGGATGGAGCGATTGGGACATTCCATCTAGACAGAGTACTGCGATGTTTGGGGAATACGAGTGTTCAGGAAAAGGATCGAATAGAACTGAGAGGGTAGAATGGTCAAAAGCTTTAAGCAGCGAGGAAGCAAGGCCTTTCCTGGGCAGAGACTACATTAATGGAGATAGATGGCTTAGATTATGA 1125 0.4151 MRLSFFQVLHLVFPVLLLVCFQAVQGVSGNTRNFITWDDFIVDEHSLSSAVSGRVIVVDQSGNGDSPTVQGAVDMIPEDNTERVKIYIYPGTYRERVHVPRSKPFISFIGKPNITVNGNELNVTANGNALNVTDIANAIPIITNSTKASDKGSDGQEMGTDSTATVWVESDFFCATTLTIENLVGKDEDKRQAVALRVDGDKVVFYRVRLVGEQDTLLDNNGTHYFYRSYIQGSVDFICGNAKSLFHECLLYSVAGFWGAIAAHHRDSADEDTGFSFVGCTINGTGSIFLGRAWGEYATTIYSYCVMDDIINPIGWSDWDIPSRQSTAMFGEYECSGKGSNRTERVEWSKALSSEEARPFLGRDYINGDRWLRL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4507g00001 374 SUPERFAMILY Pectin lyase-like 49 372 IPR011050 -
Gabi4507g00001 374 FunFam Pectinesterase 51 374 - -
Gabi4507g00001 374 Gene3D - 54 374 IPR012334 -
Gabi4507g00001 374 Pfam Pectinesterase 56 127 IPR000070 GO:0030599|GO:0042545
Gabi4507g00001 374 Pfam Pectinesterase 149 369 IPR000070 GO:0030599|GO:0042545
Gabi4507g00001 374 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 38 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4507g00001 Gabi-Chr4507 955 3194 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4507g00001 14 325 Carbohydrate Esterase AT5G55590 51.156 2.50e-112 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4507g00001 K01051 - gmx:100812850 600.897