Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4503g00001 ATGGACCTTGTATTTTCACCGCAAGGAAAGTCAAATCCTCAGACTGAGGATAATTTGTTCTTAAGGTGCTCAGATTCCTTCAGAATTCCAACGAGAGGAAAGCGCAGATATGGTTCAAAGAAGAGAAAGGTTCAAGAAGGCATTTTGGCAAGTTCAAAGAATACTAAACTTCCATCCAGGAAAGTACATGAGCCAAAGAAGAGTCTTTCTGGCTTGAACAAGAAAAGAAAATTGGAAGACAATATCAAGATTAACAATTTGGAAGAAGATGAGGAAGTTCTTTCTCTTTCATGGACAAAGTCAAGAAGGAAAACTAGAAATATGGACAATATGAAGGATACTGAACAAAATTCCAAAATATGTCATCAGTGCATGAAAAAGGAAAGAGCAGCATTTGTACCATGTACTAAATGTCAGAAAATGTACTGTCTGGGGTGCATCAACAACTGGTATCCCGATATGAAAATAGAAGATATAGCAGCGAGTTGCCCATTTTGCAGGAAAAATTGCAACTGCAATGTCTGCTTACGTTCAAAGGGAATGATTAAGACATCTAACGGGAAGTTCAAAGATTGTGAAAAGGTTCGATATTTGCAATACATGACTAATTCACTTTTTCCGTTTGTGGAACAAATTCGTGAAGAACAAAGTCATGAGCATGAGATTGAAGCCAAGATACAAGGAAAATCATGTTCTGAGATTAAGATACCTCAAAGTACTTGTAGTGACGATGAACGTATCTATTGTGATCACTGTGCCACGTCTATTGTTGATCTTTATAGAAGCTGCCCCAAGTGTTCGTTTGAAATCTGTCTTACTTGCTGTCAAGAAATACGAAATGGAAGTATTTCACCCCAGCCTGAACTGAAGCTTGAATATGATAATAAGGGCATTGAGTACATGCATGGTGGTCATCCTCAACCAGTATATTGTGATTTAGGGACTTCAGAGGATACTATTAAGATATATACTGATTGGAATGCTAACAGTGATGGAAGTATTAGATGTGCTCCAAAAGAAATGGGGGGTTGTGGTGACTGTGTATTGGAGTTGAAGTGCATGCTTCCAAATGGACTGATTTCTAATTTGGAAGACAAAACTCGTAACATGCTGAAGAATTTTTGCAAAATTGAGCACAAAACTCTTCAGAAAGACGCAATATTAAGCAGCAATTCTATGATAAGAGCTGCTTTTAGAGATGGCACGAATGATAATAACATATACTGTCCAGTGTCAAGTGACTTGTCAGAAGAAGGGCTATTTCTCTTCCAACAGCATTGGATTAAAGGTGAACCAATCATAGTTCGGGATGTTCTTAAACAAGGGACAGGTCTGAGTTGGGAGCCAAAGGTCACATGGCGAGCATTTTGTGAAAATTTGGTTTCAGGGAACAGCTCAAATGCGTCAAAAGTGAAGGCCATTGATTGTCTGTCTTGTTGTGAGGTAGAAATTCTCATTCGTGATTTCTTTAAAGGTTATACGAAAGGAAGAACATATATGAATCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCCTCTGACAAGTTTGAAGATCTTTTGCCCCGGCATTGTGATGAATTTATCCGTTGTTTACCATTTCAAGAGTACAGTGATCCTCGAGCTGGAATCCTCAACCTTGCTGCAAAGTTACCAGCTCATGTCCTAAAGCCTGACATGGGTCCTAAAACCTATATTGCATATGGGACTAAAGAAGAACTTGGCAGAGGGGACTCTGTAACAAAGCTTCACTGTGATATGTCTGATGCGGTGAATATTTTGACTCATACAGCTGAGGTTACATTAACTGATGAACAACACCCTGTTATTTCAAAATTAAAGAAAGCACACAAGGCCCAAGATGAGAAAGAGTGTCTTGCTCAGGTTGCTGAATGCCAGAAGAAGTGCCATAAAGTCAATGGAAAGATATTTCCAAATGATGTGGCTGCTGTCTCTAAAGAAACAACAGAAACAGGTGGTGCTCTTTGGGACATCTTTCGGAGGGAGGATACTGAAAAGTTAGAAGCATATCTACGAAAACATTCTAAAGAATTTAGACATACTTATTGTTGTCCAGTTCAAAAGGTTGTCCATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCACAAGAAGAAGCTGAAGGAAGAATTTGGTGTAGAACCTTGGACGTTTGAGCAGAAACTTGGAGAGGCAGTATTTATTCCTGCTGGATGTCCACACCAAGTTAGGAATCTCAAGTCATGCACTAAAGTTGCTTCAGATTTTGTGTCTCCTGAGAATATTCATATGTGCTTGCGATTAAAGGATGAATTTCGTCGTCTTCCTAGGAATCACAAGGCGAGGGAAGATAAGCTAGAGATAAAGAAGATGATCGTGCATGCTGTAGATCAAATAGTCAAGGAATTAGAAGCATTGGTGGAGTGTTCTTGA 2439 0.3924 MDLVFSPQGKSNPQTEDNLFLRCSDSFRIPTRGKRRYGSKKRKVQEGILASSKNTKLPSRKVHEPKKSLSGLNKKRKLEDNIKINNLEEDEEVLSLSWTKSRRKTRNMDNMKDTEQNSKICHQCMKKERAAFVPCTKCQKMYCLGCINNWYPDMKIEDIAASCPFCRKNCNCNVCLRSKGMIKTSNGKFKDCEKVRYLQYMTNSLFPFVEQIREEQSHEHEIEAKIQGKSCSEIKIPQSTCSDDERIYCDHCATSIVDLYRSCPKCSFEICLTCCQEIRNGSISPQPELKLEYDNKGIEYMHGGHPQPVYCDLGTSEDTIKIYTDWNANSDGSIRCAPKEMGGCGDCVLELKCMLPNGLISNLEDKTRNMLKNFCKIEHKTLQKDAILSSNSMIRAAFRDGTNDNNIYCPVSSDLSEEGLFLFQQHWIKGEPIIVRDVLKQGTGLSWEPKVTWRAFCENLVSGNSSNASKVKAIDCLSCCEVEILIRDFFKGYTKGRTYMNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRCLPFQEYSDPRAGILNLAAKLPAHVLKPDMGPKTYIAYGTKEELGRGDSVTKLHCDMSDAVNILTHTAEVTLTDEQHPVISKLKKAHKAQDEKECLAQVAECQKKCHKVNGKIFPNDVAAVSKETTETGGALWDIFRREDTEKLEAYLRKHSKEFRHTYCCPVQKVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVASDFVSPENIHMCLRLKDEFRRLPRNHKAREDKLEIKKMIVHAVDQIVKELEALVECS 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4503g00001 812 MobiDBLite consensus disorder prediction 31 73 - -
Gabi4503g00001 812 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 41 809 IPR045109 GO:0032454|GO:0033169
Gabi4503g00001 812 MobiDBLite consensus disorder prediction 57 73 - -
Gabi4503g00001 812 ProSiteProfiles Zinc finger RING-type profile. 121 167 IPR001841 -
Gabi4503g00001 812 FunFam Transcription factor jumonji domain-containing protein 404 784 - -
Gabi4503g00001 812 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 115 186 IPR018866 -
Gabi4503g00001 812 CDD cupin_RmlC-like 699 747 - -
Gabi4503g00001 812 ProSiteProfiles JmjC domain profile. 541 775 IPR003347 -
Gabi4503g00001 812 SMART cupin_9 522 775 IPR003347 -
Gabi4503g00001 812 Pfam JmjC domain, hydroxylase 660 758 IPR003347 -
Gabi4503g00001 812 SUPERFAMILY Clavaminate synthase-like 421 809 - -
Gabi4503g00001 812 Gene3D Cupin 403 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4503g00001 Gabi-Chr4503 10583 14757 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi4503g00001 JmjC 4.7e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4503g00001 K15601 K21989 gmx:100801772 1140.56