Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4500g00048 ATGAGTGACACGGCAAGTCTTCATGCACAAACAAGGACACCCATTATTTCTTCTTTTCATGCCATGGCTTACCCACATTTCGGAGATACATCACTCACGAAATTGTTTGTTGGAGGACTAGCCTGGGAGACTCCCACCGAAGAAATGCGCAGATATTTCGAGCAGTTCGGGGACATTCTTGAGGCTGTCATAATCACTGATAAGAACACAGGAAAATCCAAAGGCTACGGATTTGTAACATTCTGCGATCAGGAATCAGCAAGAAGGGCTTGTGCTGATCCAAACCCAATAATAGATGGAAGAAGAGCAAATTGTAATATTGCTTCTCTGGGAAGGACTCGACCATCACCCCCTCGAGGAAGGAATATAATTCAAGCTGGAGGAGGAACAGCACAGGGTGGTGTTCCGGCAGCAGGGCCACCGTCATTGCCACCGCCAACTGCTCTCGTGTACCCACCATATGGCTACACAACCTACACTCCTGATTATGGGTACCATCAAGCCACATTGTACAACCCACAGATTCAGCAACCACAATACTATCAACAACTCTATGGACCATCATCTTCCACCATGGGCTCTCAATATTACTATGGTTATTCTGTGCAAACACCAAGAAGCACATTTTCTTCACCCCAAGCAAATCGCCCATCAGCTGGACCGTCCTATCTATACTATCCTACACCCATGGAAGTCTCCTTCTCTGGATATCGTTCACCCCAACAACCAGCAATAAGGCAACCCTTTCCTTCCCCTAAGGATTCACAGAATCAGCAGCGTACCTCCTCTGAGACAGCAGCTGGAGTAGATGTAACTTCAGAAACTTCAAATACCCAAGGGAGGAACTAA 849 0.4676 MSDTASLHAQTRTPIISSFHAMAYPHFGDTSLTKLFVGGLAWETPTEEMRRYFEQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASLGRTRPSPPRGRNIIQAGGGTAQGGVPAAGPPSLPPPTALVYPPYGYTTYTPDYGYHQATLYNPQIQQPQYYQQLYGPSSSTMGSQYYYGYSVQTPRSTFSSPQANRPSAGPSYLYYPTPMEVSFSGYRSPQQPAIRQPFPSPKDSQNQQRTSSETAAGVDVTSETSNTQGRN 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4500g00048 282 Gene3D - 10 129 IPR012677 -
Gabi4500g00048 282 FunFam RNA-binding protein 24-B isoform X1 20 130 - -
Gabi4500g00048 282 SMART rrm1_1 34 106 IPR000504 GO:0003723
Gabi4500g00048 282 CDD RRM_RBM24_RBM38_like 33 108 - -
Gabi4500g00048 282 SUPERFAMILY RNA-binding domain, RBD 22 123 IPR035979 GO:0003676
Gabi4500g00048 282 MobiDBLite consensus disorder prediction 110 142 - -
Gabi4500g00048 282 MobiDBLite consensus disorder prediction 235 282 - -
Gabi4500g00048 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 92 IPR000504 GO:0003723
Gabi4500g00048 282 PANTHER BOULE-RELATED 19 264 - -
Gabi4500g00048 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4500g00048 Gabi-Chr4500 653700 657603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4500g00048 29 109 C2H2 Transcription Factor Family AT2G19380 39.506 1.75e-14 71.6