Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4500g00031 ATGGGAAGGTCCCCATGCTGCGATGAGAATGGCCTTAAGAAAGGACCATGGACTCCTGAAGAAGATCAAAAGCTTGTCCAGCACATTCAGAAACATGGCCATGGAAGTTGGAGAGCTCTCCCTAAGCTAGCCGGTCTTAACAGATGTGGAAAAAGTTGTAGGCTAAGGTGGACCAACTATCTAAGGCCTGACATAAAGAGGGGGAAATTTTCTCAAGAAGAGGAGCAATCAATTCTGCATCTCCATTCCATCCTTGGAAACAAATGGTCAGCAATTGCAACCCATCTTCCAGGGAGGACAGATAATGAGATCAAGAACTTCTGGAATACTCATTTAAAGAAAAAGTTAATTCAGATGGGTTTTGATCCAATGACTCACCAACCAAGAACTGACCTTGTTTCCAGCTTGCCATATCTGCTAGCTTTGGCCAACATGACAGACCTTATGGATCATCAGTCATTGGATGAACAGGCTGTGAGGTTACAAGCGGAGGCAGTTCAGCTGGCAAAGCTTCAATACGTTAATTATTTACTCCAATCTTCAAATTCCTTAAGTACCAATTCCTATGATCAAAATGCCATCACAAACATGGAACCTTACAATTTGTTAAACTCAATCTCTAATGTTAAAGAGAACCCAGTTATATACTGTACTAATTCACAACTGGATACTCAAGCCTCATTTTCTCATGGGATTGCTAGCTCCCAACCACTCCACCACCCAAGCATGTTACCTCACTTTTTAGACCCACAAGTCTCTTTTAGTTCCCAATCATGTTTGAATGGTGAGCAGGGTCAAGTTACTAACTTTGCAATGATAAGTCAAGGGGATCACACTGCTGATGACTTGTCCTGGATAATTCCATCTCCTGCTCCATTTATTCCTCCAAATGCGACAGGGACCTCAACTACCAATCCAGGTGATGCAAGCAGCAGCACTTGTAGCTATGGAGGAGGACCCTCATCTTATTGGTCTGAACTATTTTTCGAGGACCCCATTATGCATGAGTTATCTTAG 1017 0.4277 MGRSPCCDENGLKKGPWTPEEDQKLVQHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQSILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSSLPYLLALANMTDLMDHQSLDEQAVRLQAEAVQLAKLQYVNYLLQSSNSLSTNSYDQNAITNMEPYNLLNSISNVKENPVIYCTNSQLDTQASFSHGIASSQPLHHPSMLPHFLDPQVSFSSQSCLNGEQGQVTNFAMISQGDHTADDLSWIIPSPAPFIPPNATGTSTTNPGDASSSTCSYGGGPSSYWSELFFEDPIMHELS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4500g00031 338 CDD SANT 69 112 IPR001005 -
Gabi4500g00031 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi4500g00031 338 FunFam Transcription factor MYB39 69 130 - -
Gabi4500g00031 338 Gene3D - 13 66 - -
Gabi4500g00031 338 CDD SANT 16 61 IPR001005 -
Gabi4500g00031 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi4500g00031 338 Gene3D - 69 116 - -
Gabi4500g00031 338 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi4500g00031 338 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi4500g00031 338 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi4500g00031 338 Coils Coil 151 171 - -
Gabi4500g00031 338 SMART sant 13 63 IPR001005 -
Gabi4500g00031 338 SMART sant 66 114 IPR001005 -
Gabi4500g00031 338 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 225 - -
Gabi4500g00031 338 FunFam MYB-related transcription factor 13 66 - -
Gabi4500g00031 338 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi4500g00031 338 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4500g00031 Gabi-Chr4500 455385 456720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4500g00031 1 338 MYB Transcription Factor Family AT1G34670 54.743 5.03e-120 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4500g00031 Myb_DNA-binding 5.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4500g00031 K09422 - gmx:100811162 578.556