Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4500g00019 ATGACGAACTTGAATGTGGTGACTCCTGAAGAGTCATGTATTAACACGCTTATTGCTGTAGCGTCCATTTCAAACTCGCCTGTGTTACCAAGAACAGTAGTAGTGCCAGAATCACTGGCTGCGTTTGGTGGGTTTTTGGGACTGCCCCACATGAAAAGGTTGGAAGGAGCTAAAGTTAGCACATGGATTGATTCAATGAGAGCTTCTTCTCCAACGCGTGTCAAATCTAGTTTACCACCTGCTTCTGAAAACCAAGAAAAAAGTTCTTGGATTCTCTATCATCCTTCAGCGCTGAACATGTTTGATCAGATAATATATAACTCGAAAGGAAAGCAGACAGTAATTTTCCTTGACTACGATGGAACTCTCTCCCCGATCGTTGCAGATCCAGATAAAGCCTTCATGACTAGAAAGATGAGAGCCACGCTAAAGGACATAGCAAGACATTTTCCCACAGCCATCGTCACCGGAAGGTGCAGAGACAAGGTATATAACTTTGTTAAATTGGCAGAACTGTATTACGCAGGAAGCCATGGCATGGACATCAAGGGGCCAACAAAAAGCCAAAGTCCTAAGAAAGGTAATGATGAATCAGTGTTGTTCCAACCTGCGAGTCAATTCCTGCCCATGATTGATGAGGTGCACAGGATCTTGTTAGAAAAAACAAAGTCTGTCCCAGGGGCTAAGGTAGAGAACAATAAGTTTTGCTTGTCCGTGCACTTCCGTTGTGTTGAGGAAAAGAGTTGGGCAGCGTTGGCGGAGAAAGTTAGATTGGTGCTCAATGAGTACCCAAAACTTAGGCTCACCCAAGGGAGAAAAGTGCTAGAGATTCGTCCAACCATCAAATGGGACAAGGGCAAGGCTCTTGAATTCTTATTAAAATCGTTAGGATACGAGAATTCTGATGACGTATTTCCAATCTATATTGGTGATGACCGAACGGATGAGGATGCGTTTAAGGTTTTGCGCGGTAGGGGTCAAGGGATTGGGATTCTTGTTTCTAGAGTTCCAAAAGAAACAGACGCTTCCTACACATTACAAGATCCATCCGAGGTTGAGCAATTTTTGCGGCGTTTGGTGGAGTGGAAAAGATCAAGTACCGTGACACCCACAAGTGTATAA 1122 0.4403 MTNLNVVTPEESCINTLIAVASISNSPVLPRTVVVPESLAAFGGFLGLPHMKRLEGAKVSTWIDSMRASSPTRVKSSLPPASENQEKSSWILYHPSALNMFDQIIYNSKGKQTVIFLDYDGTLSPIVADPDKAFMTRKMRATLKDIARHFPTAIVTGRCRDKVYNFVKLAELYYAGSHGMDIKGPTKSQSPKKGNDESVLFQPASQFLPMIDEVHRILLEKTKSVPGAKVENNKFCLSVHFRCVEEKSWAALAEKVRLVLNEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLKSLGYENSDDVFPIYIGDDRTDEDAFKVLRGRGQGIGILVSRVPKETDASYTLQDPSEVEQFLRRLVEWKRSSTVTPTSV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4500g00019 373 Gene3D - 112 202 IPR023214 -
Gabi4500g00019 373 Gene3D - 203 370 IPR023214 -
Gabi4500g00019 373 CDD HAD_TPP 114 352 - -
Gabi4500g00019 373 FunFam Trehalose 6-phosphate phosphatase 113 199 - -
Gabi4500g00019 373 NCBIfam HAD-IIB family hydrolase 115 325 IPR006379 -
Gabi4500g00019 373 FunFam Trehalose 6-phosphate phosphatase 210 369 - -
Gabi4500g00019 373 SUPERFAMILY HAD-like 114 362 IPR036412 -
Gabi4500g00019 373 Pfam Trehalose-phosphatase 116 350 IPR003337 GO:0003824|GO:0005992
Gabi4500g00019 373 FunFam Trehalose 6-phosphate phosphatase 204 280 - -
Gabi4500g00019 373 NCBIfam trehalose-phosphatase 110 360 IPR003337 GO:0003824|GO:0005992
Gabi4500g00019 373 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 50 367 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4500g00019 Gabi-Chr4500 177338 179521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4500g00019 109 359 Trehalose Biosynthesis Gene Families AT1G70290 26.493 9.05e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4500g00019 K01087 - gmx:100788641 618.616