Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4500g00017 ATGGCAGCTATGATGGATTTCTACAACAGTACACAACTTCTTTCAGATCCCTTCAGGGGTGAACTAATGGAAGTTCTTGAACCTTTTATCAAAAGTCCTTCCCCAACCCTTTCTTCTTCTTCTTCTTCTTCTTCTCCCTCTCCCTCTCCCTCTCCCTCTGCGGCCTCATCCCCTTACGGGTTATCCAACAGCCAAAACATCATAGGCTTCGAGCAACCAACTTCTCTACTTGGTCTCAACCACCTCACACCATCTCAGATCAATCAGATCCAGGCTCAATTCCAGTTACAGAACCAGCAGAACTTGTCATGGCAACATCATCATCATCATCACAACACACTCAATTTCCTTAGTCCTAAGCCAATCCCAATGAAGCATGTGGGTATGCCTCCAAAACCCACCAAGCTTTACCGAGGGGTGAGACAGAGGCATTGGGGTAAATGGGTCGCTGAGATCAGACTCCCAAAGAACCGTACAAGGCTATGGCTTGGTACCTTCGACACTGCGGAAGAAGCTGCCTTGGCTTACGACAAGGCTGCTTACAAGCTCCGAGGTGACTTTGCTAGGCTTAACTTCCCCAACCTACGACACCAAGGTTCCTGTGTTGGAGGAGAATTCGGTGAATACAAGCCTCTTCATTCCTCTGTCGATGCCAAGCTTCAGGCTATTTGTGAAGGCTTGGTTGATTTGCAGAAACAGGGGAAGTCAGAGAAGAAGAAGCCTTTGACCTCGTCCAAGAGGTCAGCAACAGCGCGATCGAAACTGGGGTCGAAGGTGGCTCAGCCAGAGTCGACGGTGACTCACTCGGAGGTGCAATCGGTTGTTTGTGAAGCTGATTTGAAAGGTTTGGAGAAGAGTTACAAGGTTGATTCAGCTTCCTTGTCTCTGGTGATGACCGAGAGCGAGGGATCTGAAGGTTCTTCACCCCTTTCGGATCTTACTTTTGCTGATCATATCAGTGAGCCACAGTGGGAAGGTGATTCGGATAATTTCAATCTGCACAAGTACCCATCTTACGAGATCGATTGGGATTCTCTGTGA 1041 0.4832 MAAMMDFYNSTQLLSDPFRGELMEVLEPFIKSPSPTLSSSSSSSSPSPSPSPSAASSPYGLSNSQNIIGFEQPTSLLGLNHLTPSQINQIQAQFQLQNQQNLSWQHHHHHHNTLNFLSPKPIPMKHVGMPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSCVGGEFGEYKPLHSSVDAKLQAICEGLVDLQKQGKSEKKKPLTSSKRSATARSKLGSKVAQPESTVTHSEVQSVVCEADLKGLEKSYKVDSASLSLVMTESEGSEGSSPLSDLTFADHISEPQWEGDSDNFNLHKYPSYEIDWDSL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4500g00017 346 PRINTS Ethylene responsive element binding protein signature 137 148 IPR001471 GO:0003700|GO:0006355
Gabi4500g00017 346 PRINTS Ethylene responsive element binding protein signature 159 175 IPR001471 GO:0003700|GO:0006355
Gabi4500g00017 346 SMART rav1_2 136 199 IPR001471 GO:0003700|GO:0006355
Gabi4500g00017 346 MobiDBLite consensus disorder prediction 234 266 - -
Gabi4500g00017 346 SUPERFAMILY DNA-binding domain 136 194 IPR016177 GO:0003677
Gabi4500g00017 346 MobiDBLite consensus disorder prediction 246 266 - -
Gabi4500g00017 346 CDD AP2 135 195 IPR001471 GO:0003700|GO:0006355
Gabi4500g00017 346 ProSiteProfiles AP2/ERF domain profile. 136 193 IPR001471 GO:0003700|GO:0006355
Gabi4500g00017 346 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 346 - -
Gabi4500g00017 346 Gene3D AP2/ERF domain 136 194 IPR036955 GO:0003700|GO:0006355
Gabi4500g00017 346 FunFam Ethylene-responsive transcription factor 2 135 194 - -
Gabi4500g00017 346 MobiDBLite consensus disorder prediction 33 60 - -
Gabi4500g00017 346 Pfam AP2 domain 137 185 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4500g00017 Gabi-Chr4500 158856 160913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4500g00017 1 346 AP2-EREBP Transcription Factor Family AT1G78080 48.936 1.70e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi4500g00017 AP2 7.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4500g00017 K09286 - qsa:O6P43_015285 394.815