Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4499g00007 ATGGAAGATCAACCATGTCATAACTCTCATGTATCAGCACCTTCTTCTTCTTCTTTAACTGCTGCCCCTCCTGAGAATCCATCTTCCTCCTCTTCTCCTTCTACTTCACAGTTGCAAGCAGATGAAGCTAACCAAGCAGGTGCAAATGAGAACAACCAACACAACCATCAGCACCAGCAACAACCGGCTAGCAGGTCTTATTGGGTCAACATTTCAATCACAAATCCGTCGAGGACTGCCATGAAGGATGATGTCTGGTACTGCATGGTTGTGCTAGCGACATTTTGGATCATTGCATCCGTTACTCTTGCACTTGGTATCTGCGGATCTGTAAGTTTACAATTGGGACCCTACTGCTCACGTTTGATAGATATCAACTCAGTATTAGTTCAGTCTGTCAAGGTGGAACAAATTGATAAGCCAAAACCTGGTCTACTGCTATATGGATTTGATAAACCCCCTCCACTAGATGTCAAAATCAATTGGACTGAGATGTATAATGCATCAATACCAGCAAAATTTCAAAAGGAATGGATATTCTACCTGAACAAGGACTCCCAATTGGATGTTCTTTACAGTGTTAAGTCCCCAGCAGCTTTATTTCTCGTGATTTCTAAAGGTAGAGAAGACCTTGTTGAATGGATAGAGAACCCATCAATCCCTAATGCAACATTTTACTGGAATACTATCTATGGAAGCGGCAGGATCACAAAAAAAATGTCACATTCACATAATTATTATGTGGCAGTTTGCAATATGAACCCTGAAAATGTGGAGGTAGAATTGAACTTCACTGTAAATGCACTTCTCTACAATACAACCAACACATACCACAGATGTTCCCTGGATAACGGCTTATGCAGATTAAACCTTTTTCTTTCGGAGTCAAGCACTGCAGTATTAACAACTCCAGGTCCTAGAGAGGGTGTTTCCAATTCAAATGAAGAAGAATGGTTTGATGTGAAAGTGTCTTATGAACCAAGATGGATCATATTTTTCACAGTATCAGGTGTGATAGCTGTGCTACTGTTGTTTGCTATGAGATTCTGCAAAATGTTACAAACTAATAGGGAAGAAAATGGAGGATTACAACAAGTGGAAGTGGTTTCAGAACGAACTCCACTGCTAAATAGTAAAGATGATGATCTTTCAAGCTGGGGTTCATCTTATGAATCTTTCTCTAATGAAGAAGAGGATCTCAAAGTAAGGCTTGCATTGAATGCTGATGAAGGAAAGCCAGTAATGGAAGGGGAAACTAGCAATAGTCTCCAGCATTTGTGTGTTATTTGCTTTGATGCTCCTAAGGATTGCTTCTTTCTCCCTTGTGGACATTGTGCAGCATGCTTTGCATGTGGAACAAGAATTGCTGCAGAAGCTAGCACTTGTCCAATATGCAGAAGGAATATGAAGAAAGTAAGGAAAATTTTTACAGTGTAA 1437 0.4015 MEDQPCHNSHVSAPSSSSLTAAPPENPSSSSSPSTSQLQADEANQAGANENNQHNHQHQQQPASRSYWVNISITNPSRTAMKDDVWYCMVVLATFWIIASVTLALGICGSVSLQLGPYCSRLIDINSVLVQSVKVEQIDKPKPGLLLYGFDKPPPLDVKINWTEMYNASIPAKFQKEWIFYLNKDSQLDVLYSVKSPAALFLVISKGREDLVEWIENPSIPNATFYWNTIYGSGRITKKMSHSHNYYVAVCNMNPENVEVELNFTVNALLYNTTNTYHRCSLDNGLCRLNLFLSESSTAVLTTPGPREGVSNSNEEEWFDVKVSYEPRWIIFFTVSGVIAVLLLFAMRFCKMLQTNREENGGLQQVEVVSERTPLLNSKDDDLSSWGSSYESFSNEEEDLKVRLALNADEGKPVMEGETSNSLQHLCVICFDAPKDCFFLPCGHCAACFACGTRIAAEASTCPICRRNMKKVRKIFTV 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4499g00007 478 SMART ring_2 427 465 IPR001841 -
Gabi4499g00007 478 MobiDBLite consensus disorder prediction 1 42 - -
Gabi4499g00007 478 Pfam Domain of unknown function (DUF4792) 144 211 IPR032008 -
Gabi4499g00007 478 Pfam Zinc finger, C3HC4 type (RING finger) 425 472 - -
Gabi4499g00007 478 MobiDBLite consensus disorder prediction 8 42 - -
Gabi4499g00007 478 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 478 IPR013083 -
Gabi4499g00007 478 ProSiteProfiles Zinc finger RING-type profile. 427 466 IPR001841 -
Gabi4499g00007 478 SUPERFAMILY RING/U-box 426 472 - -
Gabi4499g00007 478 Pfam Domain of unknown function (DUF4793) 236 345 IPR032010 -
Gabi4499g00007 478 PANTHER OS05G0521000 PROTEIN 57 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4499g00007 Gabi-Chr4499 34342 38996 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4499g00007 427 475 C3H Transcription Factor Family AT3G06140 36.735 7.38e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4499g00007 - - ccaj:109796671 582.022