Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4499g00006 ATGGCAAAAACGACGTCGTTGCTGCTCTGTACACTGCTCCTCTTAGGAACCCTAGCTCTCACCCAGTCAAAGGAGGATTTGAAGGAAGTGACCCACAAAGTTTACTTTGATGTTGAGATTGATGGAGAAGCTGCAGGTCGTGTTGTGATTGGTCTTTTTGGGAAGACAGTTCCAAAAACTGCAGAAAACTTTCGAGCTCTGTGCACAGGGGAGAAGGGAACTGGTAAAAGTGGAAAGCCTCTTCACTACAAAGGTAGCACATTCCATAGAATTATACCTAGCTTTATGATCCAAGGAGGTGATTTTACTCATGGCAACGGGATGGGTGGAGAATCAATTTATGGAGAGAAGTTTGCTGATGAGAATTTCAAGTTAAAGCATACTGGACCAGGATTTCTATCAATGGCAAACGCTGGTCCTGATACCAATGGCTCACAATTTTTCATTACGACTGTGACAACAAGCTGGTTGGATGGAAAGCATGTTGTTTTTGGAAAGGTGCTTTCTGGAATGGATGTTATTTACAAGATTGAAGCTGAAGGAAAGCAAAGTGGCACTCCCAAGAGCAAGGTTGTGATTGCTGACAGTGGTGAACTACCTCTCTGA 606 0.4356 MAKTTSLLLCTLLLLGTLALTQSKEDLKEVTHKVYFDVEIDGEAAGRVVIGLFGKTVPKTAENFRALCTGEKGTGKSGKPLHYKGSTFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGPDTNGSQFFITTVTTSWLDGKHVVFGKVLSGMDVIYKIEAEGKQSGTPKSKVVIADSGELPL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4499g00006 201 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 146 IPR002130 GO:0000413|GO:0003755
Gabi4499g00006 201 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 159 174 IPR002130 GO:0000413|GO:0003755
Gabi4499g00006 201 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 52 67 IPR002130 GO:0000413|GO:0003755
Gabi4499g00006 201 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 88 100 IPR002130 GO:0000413|GO:0003755
Gabi4499g00006 201 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 146 158 IPR002130 GO:0000413|GO:0003755
Gabi4499g00006 201 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 33 199 - -
Gabi4499g00006 201 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 35 198 IPR002130 GO:0000413|GO:0003755
Gabi4499g00006 201 CDD cyclophilin_ABH_like 32 197 - -
Gabi4499g00006 201 FunFam Peptidyl-prolyl cis-trans isomerase 27 200 - -
Gabi4499g00006 201 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 36 196 IPR002130 GO:0000413|GO:0003755
Gabi4499g00006 201 SUPERFAMILY Cyclophilin-like 29 199 IPR029000 -
Gabi4499g00006 201 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 83 100 IPR020892 GO:0003755|GO:0006457
Gabi4499g00006 201 PIRSF Peptidylpro_ismrse 17 200 IPR024936 GO:0003755
Gabi4499g00006 201 Gene3D - 19 200 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4499g00006 Gabi-Chr4499 30208 32823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4499g00006 46 178 U-box Gene Family AT5G67530 47.761 1.23e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4499g00006 K01802 - ath:AT2G29960 355.14