LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4499g00005	ATGGCAAAAACGACGTCGTTGCTGCTCTGTACACTGCTCCTCTTAGGAACCCTAGCTCTCACCCAGTCAAAGGAGGATTTGAAGGAAGTGACCCACAAAGTTTACTTTGATGTTGAGATTGATGGAGAAGCTGCAGGTCGTGTTGTGATTGGTCTTTTTGGGAAGACAGTTCCAAAAACTGCAGAAAACTTTCGAGCTCTGTGCACAGGGGAGAAGGGAACTGGTAAAAGTGGAAAGCCTCTTCACTACAAAGGTAGCACATTCCATAGAATTATACCTAGCTTTATGATCCAAGGAGGTGATTTTACTCATGGCAACGGGATGGGTGGAGAATCAATTTATGGAGAGAAGTTTGCTGATGAGAATTTCAAGTTAAAGCATACTGGTCCTGATACCAATGGCTCACAATTTTTCATTACGACTGTGACAACAAGCTGGTTGGATGGAAAGCATGTTGTTTTTGGAAAGGTGCTTTCTGGAATGGATGTTATTTACAAGATTGAAGCTGAAGGAAAGCAAAGTGGCACTCCCAAGAGCAAGGTTGTGATTGCTGACAGTGGTGAACTACCTCTCTGA	576	0.434	MAKTTSLLLCTLLLLGTLALTQSKEDLKEVTHKVYFDVEIDGEAAGRVVIGLFGKTVPKTAENFRALCTGEKGTGKSGKPLHYKGSTFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPDTNGSQFFITTVTTSWLDGKHVVFGKVLSGMDVIYKIEAEGKQSGTPKSKVVIADSGELPL	191

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4499g00005	191	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	36	186	IPR002130	GO:0000413\|GO:0003755
	Gabi4499g00005	191	SUPERFAMILY	Cyclophilin-like	29	189	IPR029000	-
	Gabi4499g00005	191	Gene3D	-	19	190	IPR029000	-
	Gabi4499g00005	191	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	33	189	-	-
	Gabi4499g00005	191	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	88	100	IPR002130	GO:0000413\|GO:0003755
	Gabi4499g00005	191	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	149	164	IPR002130	GO:0000413\|GO:0003755
	Gabi4499g00005	191	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	52	67	IPR002130	GO:0000413\|GO:0003755
	Gabi4499g00005	191	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	136	148	IPR002130	GO:0000413\|GO:0003755
	Gabi4499g00005	191	PIRSF	Peptidylpro_ismrse	18	190	IPR024936	GO:0003755
	Gabi4499g00005	191	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	83	100	IPR020892	GO:0003755\|GO:0006457
	Gabi4499g00005	191	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	35	188	IPR002130	GO:0000413\|GO:0003755
	Gabi4499g00005	191	FunFam	Peptidyl-prolyl cis-trans isomerase	27	190	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4499g00005	Gabi-Chr4499	30208	32833	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4499g00005	46	168	U-box Gene Family	AT5G67530	43.284	5.70e-22	90.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4499g00005	K01802		-	ath:AT2G29960	333.954