Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4497g00002 ATGGCGACGTACTTTCATGGAAACACTTCTGATATTCAATCTTCTGCGGATGGGTTGCAGACACTTTACCTTATGAACCCAACCTACGTACCCTACCCTGACGCGCCACAACACTCAACAACGCCCAACATGCTCCTCGTCAATTCCAACGCTACCACTCCATCCAACGCGCTCAACCTCGCCAACTTCCCTCACGCGCCGCAAGTGCCACCATCCCCCAACCAACAACAGCAGCACCACCTGATTCATGGGGTAACAAACATCCTCGGATCCACCAACTCCGACAATCACAACCGACCACCTTTTCTCGGACACCCCGAAATCAACGCCTTCCACGGCTTCTCCTCCGCGGCGGCAGCCCCTCGCGTGCACTATAACTTGTGGGGTCAGGTAATTGAGCAACCGTCCTCCGCCGCTGCAACCACGTCTAGAAGCTCCGGCGATGGCGGCGCTGGTTTCCGGCAGCCTAGTCAGCAGGGTTTGTCGCTCAGCCTTTCCTCGCAGCAAACAGCTTACACGTCTCTTTCCGGTGAGCTTGACCTTCAAGGACATGCTCAGGTCGCCGGAATAGGTAATTCTCCGTCGTCGGTGTCCAACGGAGTTTCGAGCGTGAACGGCGTTCTTTTGGGGTCAAAGTTTTTTAAAGCAGCGCAGGAGCTTCTCGATGAAGTTGTTAACGTGGGTAAGGGAATCTACAAAGACGACAAATTCGCAGAGGGAGAAAATAAAGAGAAAATGAAAGCGAAGAGAGAATCTAGTTCTGGTGTTGGTGACTGTTCAAGTGGTGAAGGAGAAAACAGTGCAAACAAGCAAGTAGCTGAACTTAGTACAGCTCAGAGACAAGAACTTCAGATGAAGAAGTCCAAGCTTATCACCATGCTCGATGAGGTAGAGCAAAGGTATAGGCAATATCATCACCAAATGCAAATTGTAATATCATCATTTGAGCAAGCAGCGGGTTTTGGGGCAGCTAAATCTTACACAGCACTTGCCCTAAAGACTATCTCAAAGCAATTTAGAAGTCTTAAAGATGCAATCTCTTCACAAATCAGAGCAACGAGCATGACCTTAGGTGAAGATGAATTCTTTGGAGTTAAGGTAGAAGGTTCGAAACTTAGGTATGTTGATCACCATCTCCGGCAACAAAGGGCACTACAACAGCTTGGAATGATTCAACCCAATGCTTGGAGACCCCAAAGAGGCTTGCCTGAACGAGCTGTTTCCATTCTTCGTGCTTGGCTTTTTGAGCATTTCCTTCACCCCTATCCAAAAGATTCTGATAAAGTTATGCTTGCTAAACAAACTGGACTTGCTAGAAGAACCAATATATATTTTTTAATGCAGGTGTCAAACTGGTTTATTAATGCCCGAGTTCGGCTTTGGAAACCAATGGTTGAAGAAATGTATTTGGAAGAAATCAAGGAGCAAGAAGATACTAATGTTTCGGATAACATCAGATCAGAGGAGTTGGGGTCAACAACAAATGTTACCCAGGAATCAGGTGCCATTAAAGTTGATCAAATTAAAGTTCTCCAATCAAAACAAGAAAGCTTCAACAACCGAAACACATCTCCAACCGAAATCTCAACAAATTCTTCAATGTCCACCTCTCCCATGAGAGGATCCTTTCAATCCCACTCTGGTTTCCATCACATGCAAAGTCATCCAAATAAGCCAAGAAGTTCAGAAATGCAGAACTCTCCAAGTAGTTTCCTTTCAGTGGACATGGAAATGAAGCAAGGAGATACAAATAGAGAAGCCAACACAAAGTTTGGCATTGAAAGGCACAACAGAGATGGCTACCCTTTAATGACTGGCAATACAAACCATGGAGGGGGTTTTGGAGCGTTCTCAATGGAAGACATTGGAAGTAGGTTTAATGTAACTGAGCAATTGGCTTCTAGGTTCCATGGAAATGGTGTTTCTCTTACTCTGGGACTTCCCCACAATGAGAACCTTCCTATCTCAGGAACTCAACATGGATTTCTCTCACAGAATATACATTTAGGAAGGAGACTTGAGATGGGAACCAATGGAAATGAGTTTTGTGCAATCAACACTCAACCTTCTTCTCACTCAGGCACCAGTTATGAGAGTATTGACATTCAAAACAGAAAGAGGTTTGCTTCACAGTTATTGCCAGATTTTGTAGCCTGA 2157 0.4539 MATYFHGNTSDIQSSADGLQTLYLMNPTYVPYPDAPQHSTTPNMLLVNSNATTPSNALNLANFPHAPQVPPSPNQQQQHHLIHGVTNILGSTNSDNHNRPPFLGHPEINAFHGFSSAAAAPRVHYNLWGQVIEQPSSAAATTSRSSGDGGAGFRQPSQQGLSLSLSSQQTAYTSLSGELDLQGHAQVAGIGNSPSSVSNGVSSVNGVLLGSKFFKAAQELLDEVVNVGKGIYKDDKFAEGENKEKMKAKRESSSGVGDCSSGEGENSANKQVAELSTAQRQELQMKKSKLITMLDEVEQRYRQYHHQMQIVISSFEQAAGFGAAKSYTALALKTISKQFRSLKDAISSQIRATSMTLGEDEFFGVKVEGSKLRYVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLARRTNIYFLMQVSNWFINARVRLWKPMVEEMYLEEIKEQEDTNVSDNIRSEELGSTTNVTQESGAIKVDQIKVLQSKQESFNNRNTSPTEISTNSSMSTSPMRGSFQSHSGFHHMQSHPNKPRSSEMQNSPSSFLSVDMEMKQGDTNREANTKFGIERHNRDGYPLMTGNTNHGGGFGAFSMEDIGSRFNVTEQLASRFHGNGVSLTLGLPHNENLPISGTQHGFLSQNIHLGRRLEMGTNGNEFCAINTQPSSHSGTSYESIDIQNRKRFASQLLPDFVA 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4497g00002 718 MobiDBLite consensus disorder prediction 254 270 - -
Gabi4497g00002 718 ProSiteProfiles 'Homeobox' domain profile. 393 463 IPR001356 GO:0003677
Gabi4497g00002 718 Gene3D - 399 484 - -
Gabi4497g00002 718 MobiDBLite consensus disorder prediction 138 165 - -
Gabi4497g00002 718 Pfam Associated with HOX 207 347 IPR006563 -
Gabi4497g00002 718 Pfam Homeobox KN domain 413 459 IPR008422 GO:0003677|GO:0006355
Gabi4497g00002 718 SUPERFAMILY Homeodomain-like 397 469 IPR009057 -
Gabi4497g00002 718 MobiDBLite consensus disorder prediction 515 568 - -
Gabi4497g00002 718 SMART prehox3 202 348 IPR006563 -
Gabi4497g00002 718 Coils Coil 280 300 - -
Gabi4497g00002 718 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 87 489 - -
Gabi4497g00002 718 SMART HOX_1 396 467 IPR001356 GO:0003677
Gabi4497g00002 718 CDD homeodomain 396 464 IPR001356 GO:0003677
Gabi4497g00002 718 MobiDBLite consensus disorder prediction 242 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4497g00002 Gabi-Chr4497 64115 68462 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4497g00002 1 718 Homeobox Transcription Factor Family AT2G35940 43.439 4.75e-135 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4497g00002 - - gmx:100779075 946.036