Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4494g00008 ATGTTCAATCAGAGTATGGATTCTGTAAGGGATGCGGGTGATGTTGCAGGGACAGTGCTAATTCCCATGCGGTTTGTGTGGCCATATGGCGGAAGGAGTGTGTTTCTCAGTGGTTCTTTCACACGGTGGTCTCAGCTTCTTCCAATGTCGCCAGTCGAAGGTTGCCCAACTGTGTTTCAAGTTATTTATAGCTTGCCCCCTGGTTATCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGGCATGATGAGCATCAGCCTTTTGTACCTGGAGAATATGGGATAGTCAACACTGTCTTCTTGGCTACTGATCCTAACTACATACCTGTTTTAACCCCAGATATTGCTTCTGGAAATAACATGGATGTGGATAATGAGGCTTTTCGCCGTGGGGTTCGGTTGACGGATGGTACATTGAGTGAGGTTCTGCCAAGAATATCAGATGCTGATGTACAGATCTCCTGTCAGCGTATTTCTGCATTTCTGTCTATGCACACAGCTTATGAATTATTTCCTGAGTCAGGCAAGGTTGTTGCCTTGGATGTTGATCTGCCAGTGAAACAGGCATTTCATATACTGCATGAGCAGGGAATTTTCATGGCTCCACTTTGGGACTTCTGCAAGGGACAATTTGTTGGTGTTCTTAGTGCTTTGGATTTTATTCTAATTTTAAGAGAGCTGGGGAATCATGGGTCCAATCTGACAGAAGAGGAGCTTGAAACACATACCGTTTCAGCTTGGAAAGAAGGAAAATCATATCTAAATAGACAGAACAATGGGCATGGAACTGCATTTTCCAGACCTTTTTTTATCCATGCAGGGCCATATGATAATCTGAAAGACATTGCCATGAAGATCGTGCAAAAGGAGGTTTCAACAGTTCCTATTATCCATTCATCTTCTGAAGATGGTTCATTTCCTCAGTTACTACATCTTGCTTCACTTTCTGGAATACTTAAATGTATTTGTAGGTATTTTAGGAATTGCTCTAGTTCATTGCCTATACTTCAACTTCCAATCGGTGCAATACCTGTGGGCACGTGGATGCCTAAAATCGGGGAATCAAATCGGCGGCCTCTAGCAATGCTGAGACCAAGTGCTTCTCTCGCTTCAGCCCTAAATTTGTTAGTTCAAGCCCAAGTAAGTTCAATACCGATAGTCGATGATAATGACTCGTTACTTGATGTATATTGTCGGAGTGACATAACGGCTTTGGCAAAGGACAGAGCATATACACATATTAATCTTGATGAAATGACTGTTCATCAGGCTTTGCAGTTGGGCCAGGACGCATATAGTCCCTATGAGCTTAGAAGTCAAAGATGTCAGATGTGTTTGCGTTCTGATTCTCTGCATAAAGTGATGGAACGTCTGGCAAATCCAGGTGTGAGGCGGCTTGTTATTGTGGAAGCTGGGAGCAAGCGTGTAGAAGGCATTGTTTCATTGAGTGATATATTCAAGTTCTTCCTTGGTGAATGA 1479 0.4293 MFNQSMDSVRDAGDVAGTVLIPMRFVWPYGGRSVFLSGSFTRWSQLLPMSPVEGCPTVFQVIYSLPPGYHQYKFFVDGEWRHDEHQPFVPGEYGIVNTVFLATDPNYIPVLTPDIASGNNMDVDNEAFRRGVRLTDGTLSEVLPRISDADVQISCQRISAFLSMHTAYELFPESGKVVALDVDLPVKQAFHILHEQGIFMAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTVSAWKEGKSYLNRQNNGHGTAFSRPFFIHAGPYDNLKDIAMKIVQKEVSTVPIIHSSSEDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPIGAIPVGTWMPKIGESNRRPLAMLRPSASLASALNLLVQAQVSSIPIVDDNDSLLDVYCRSDITALAKDRAYTHINLDEMTVHQALQLGQDAYSPYELRSQRCQMCLRSDSLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFFLGE 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4494g00008 492 ProSiteProfiles CBS domain profile. 355 412 IPR000644 -
Gabi4494g00008 492 Pfam CBS domain 357 403 IPR000644 -
Gabi4494g00008 492 Pfam CBS domain 444 490 IPR000644 -
Gabi4494g00008 492 CDD E_set_AMPKbeta_like_N 22 100 - -
Gabi4494g00008 492 Gene3D - 339 492 IPR046342 -
Gabi4494g00008 492 FunFam Sucrose nonfermenting 4-like protein 18 103 - -
Gabi4494g00008 492 SUPERFAMILY CBS-domain pair 341 491 IPR046342 -
Gabi4494g00008 492 ProSiteProfiles CBS domain profile. 170 232 IPR000644 -
Gabi4494g00008 492 SUPERFAMILY CBS-domain pair 157 328 IPR046342 -
Gabi4494g00008 492 ProSiteProfiles CBS domain profile. 437 492 IPR000644 -
Gabi4494g00008 492 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 150 489 - -
Gabi4494g00008 492 SUPERFAMILY E set domains 21 102 IPR014756 -
Gabi4494g00008 492 Gene3D Immunoglobulins 21 109 IPR013783 -
Gabi4494g00008 492 Gene3D - 148 331 IPR046342 -
Gabi4494g00008 492 SMART cbs_1 441 490 IPR000644 -
Gabi4494g00008 492 SMART cbs_1 359 407 IPR000644 -
Gabi4494g00008 492 SMART cbs_1 176 225 IPR000644 -
Gabi4494g00008 492 Pfam Glycogen recognition site of AMP-activated protein kinase 21 101 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4494g00008 Gabi-Chr4494 37849 48014 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4494g00008 5 104 Protein tyrosine phosphatase (PTP) family AT3G52180 30.556 1.90e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4494g00008 - - gmx:100785692 899.812