Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4494g00007 ATGTTCAATCAGAGTATGGATTCTGTAAGGGATGCGGGTGATGTTGCAGGGACAGTGCTAATTCCCATGCGGTTTGTGTGGCCATATGGCGGAAGGAGTGTGTTTCTCAGTGGTTCTTTCACACGGTGGTCTCAGCTTCTTCCAATGTCGCCAGTCGAAGGTTGCCCAACTGTGTTTCAAGTTATTTATAGCTTGCCCCCTGGTTATCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGGCATGATGAGCATCAGCCTTTTGTACCTGGAGAATATGGGATAGTCAACACTGTCTTCTTGGCTACTGATCCTAACTACATACCTGTTTTAACCCCAGATATTGCTTCTGGAAATAACATGGATGTGGATAATGAGCAGGTTCGGTTGACGGATGGTACATTGAGTGAGGTTCTGCCAAGAATATCAGATGCTGATGTACAGATCTCCTGTCAGCGTATTTCTGCATTTCTGTCTATGCACACAGCTTATGAATTATTTCCTGAGTCAGGCAAGGTTGTTGCCTTGGATGTTGATCTGCCAGTGAAACAGGCATTTCATATACTGCATGAGCAGGGAATTTTCATGGCTCCACTTTGGGACTTCTGCAAGGGACAATTTGTTGGTGTTCTTAGTGCTTTGGATTTTATTCTAATTTTAAGAGAGCTGGGGAATCATGGGTCCAATCTGACAGAAGAGGAGCTTGAAACACATACCGTTTCAGCTTGGAAAGAAGGAAAATCATATCTAAATAGACAGAACAATGGGCATGGAACTGCATTTTCCAGACCTTTTTTTATCCATGCAGGGCCATATGATAATCTGAAAGACATTGCCATGAAGATCGTGCAAAAGGAGGTTTCAACAGTTCCTATTATCCATTCATCTTCTGAAGATGGTTCATTTCCTCAGTTACTACATCTTGCTTCACTTTCTGGAATACTTAAATGTATTTGTAGGTATTTTAGGAATTGCTCTAGTTCATTGCCTATACTTCAACTTCCAATCGGTGCAATACCTGTGGGCACGTGGATGCCTAAAATCGGGGAATCAAATCGGCGGCCTCTAGCAATGCTGAGACCAAGTGCTTCTCTCGCTTCAGCCCTAAATTTGTTAGTTCAAGCCCAAGTAAGTTCAATACCGATAGTCGATGATAATGACTCGTTACTTGATGTATATTGTCGGAGTGACATAACGGCTTTGGCAAAGGACAGAGCATATACACATATTAATCTTGATGAAATGACTGTTCATCAGGCTTTGCAGTTGGGCCAGGACGCATATAGTCCCTATGAGCTTAGAAGTCAAAGATGTCAGATGTGTTTGCGTTCTGATTCTCTGCATAAAGTGATGGAACGTCTGGCAAATCCAGGTGTGAGGCGGCTTGTTATTGTGGAAGCTGGGAGCAAGCGTGTAGAAGGCATTGTTTCATTGAGTGATATATTCAAGTTCTTCCTTGGTGAATGA 1467 0.4274 MFNQSMDSVRDAGDVAGTVLIPMRFVWPYGGRSVFLSGSFTRWSQLLPMSPVEGCPTVFQVIYSLPPGYHQYKFFVDGEWRHDEHQPFVPGEYGIVNTVFLATDPNYIPVLTPDIASGNNMDVDNEQVRLTDGTLSEVLPRISDADVQISCQRISAFLSMHTAYELFPESGKVVALDVDLPVKQAFHILHEQGIFMAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTVSAWKEGKSYLNRQNNGHGTAFSRPFFIHAGPYDNLKDIAMKIVQKEVSTVPIIHSSSEDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPIGAIPVGTWMPKIGESNRRPLAMLRPSASLASALNLLVQAQVSSIPIVDDNDSLLDVYCRSDITALAKDRAYTHINLDEMTVHQALQLGQDAYSPYELRSQRCQMCLRSDSLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFFLGE 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4494g00007 488 Pfam Glycogen recognition site of AMP-activated protein kinase 21 101 IPR032640 -
Gabi4494g00007 488 Gene3D Immunoglobulins 21 110 IPR013783 -
Gabi4494g00007 488 SUPERFAMILY E set domains 21 102 IPR014756 -
Gabi4494g00007 488 CDD E_set_AMPKbeta_like_N 22 100 - -
Gabi4494g00007 488 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 146 485 - -
Gabi4494g00007 488 FunFam Sucrose nonfermenting 4-like protein 18 103 - -
Gabi4494g00007 488 Pfam CBS domain 440 486 IPR000644 -
Gabi4494g00007 488 Pfam CBS domain 353 399 IPR000644 -
Gabi4494g00007 488 ProSiteProfiles CBS domain profile. 166 228 IPR000644 -
Gabi4494g00007 488 SUPERFAMILY CBS-domain pair 153 324 IPR046342 -
Gabi4494g00007 488 ProSiteProfiles CBS domain profile. 433 488 IPR000644 -
Gabi4494g00007 488 ProSiteProfiles CBS domain profile. 351 408 IPR000644 -
Gabi4494g00007 488 Gene3D - 335 488 IPR046342 -
Gabi4494g00007 488 Gene3D - 144 327 IPR046342 -
Gabi4494g00007 488 SMART cbs_1 355 403 IPR000644 -
Gabi4494g00007 488 SMART cbs_1 172 221 IPR000644 -
Gabi4494g00007 488 SMART cbs_1 437 486 IPR000644 -
Gabi4494g00007 488 SUPERFAMILY CBS-domain pair 337 487 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4494g00007 Gabi-Chr4494 37849 48017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4494g00007 5 147 Protein tyrosine phosphatase (PTP) family AT3G52180 27.632 1.19e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4494g00007 - - gmx:100785692 887.486