Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4491g00001 ATGGCATCACAACCTGAAATTGAGCATCCTAAGAAGGCCTACGGATGGGCTGCTAGGAATACTTCTGGTTTTCTCTCCCCTTTCAATTTCTCCAGAAGGGAAACGGGTGAAAAAGACGTGGCATTCAAAGTGTTGTATTGTGGGATATGCCACTCGGACCTCCACTCAGCAAAGAACGAATGGGGCTTTTCCACCTATCCACTAGTCCCTGGGCATGAGATAGTTGGTGTAGTGACAGAGGTGGGAAGCAAAGTAGAGAAGTTCAAAGTTGGGGACAAGGTTGGTGTGGGGTGCTTGGTTGAGTCCTGCAGATCATGCCAAAATTGTGCTGATAATCTTGAGAATTACTGCCCCAAATTTACTCTCACATATGGTGCCAAGAATGTTGATGGCACAATTACATATGGAGGCTACTCTGACTCTATGGTTGCAGACGAGCACTTTGTAGTTGGCATTCCTGATGGCTTACCACTTGATGCTGCTGCTCCTCTCCTTTGTGCTGGGATCACAGTGTATAGCCCTCTTAGATATTTTGGACTCGACAAGCCTGGTCTTCATGTGGGTGTGGTTGGTCTTGGTGGACTAGGCCATATGGCTGTTAAGTTTGCCAAAGCTTTTGGAGCTAATGTGACAGTAATTAGTACATCACCCAACAAAAAGGAGGAAGCAATAGAACATCTGGGAGCTGACTCGTTTCTGATAAGCCGTGACCAAGATCAGATGCAGGCTGCAGTGGGCACTTTGGATGGAATTATTGACACAGTTTCTGCAGTTCATCCTCTCCTACCTCTGATTGGTTTACTCAAGTCCCATGGAAAGCTTGTGATGGTTGGTGCACCAGAAAAGCCTCTGGAGCTGCCAGTCTTTCCTTTACTTATGGGTAAGCAATATTTTACATCATTGGCAGGGAGAAAGACAGTAGCTGGCAGTGGCATTGGAGGGATGAAGGAGACGCAAGAGATGATTGATTTTGCTGCTAAACACAACATAAAACCGGACATTGAGGTCATTCCTATTGATTATGTCAACACAGCAATGGAGCGCCTCCTCAAAGCAGATGTGAAATATCGATTTGTGATTGACATTGGAAACACACTCAAACCAAGCTCTTAA 1113 0.4564 MASQPEIEHPKKAYGWAARNTSGFLSPFNFSRRETGEKDVAFKVLYCGICHSDLHSAKNEWGFSTYPLVPGHEIVGVVTEVGSKVEKFKVGDKVGVGCLVESCRSCQNCADNLENYCPKFTLTYGAKNVDGTITYGGYSDSMVADEHFVVGIPDGLPLDAAAPLLCAGITVYSPLRYFGLDKPGLHVGVVGLGGLGHMAVKFAKAFGANVTVISTSPNKKEEAIEHLGADSFLISRDQDQMQAAVGTLDGIIDTVSAVHPLLPLIGLLKSHGKLVMVGAPEKPLELPVFPLLMGKQYFTSLAGRKTVAGSGIGGMKETQEMIDFAAKHNIKPDIEVIPIDYVNTAMERLLKADVKYRFVIDIGNTLKPSS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4491g00001 370 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 331 IPR036291 -
Gabi4491g00001 370 Pfam Zinc-binding dehydrogenase 194 326 IPR013149 -
Gabi4491g00001 370 CDD CAD1 15 361 IPR047109 GO:0016616
Gabi4491g00001 370 SUPERFAMILY GroES-like 9 199 IPR011032 -
Gabi4491g00001 370 SMART PKS_ER_names_mod 23 360 IPR020843 GO:0016491
Gabi4491g00001 370 PANTHER ALDEHYDE REDUCTASE 5 365 IPR047109 GO:0016616
Gabi4491g00001 370 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Gabi4491g00001 370 FunFam Uncharacterized protein 16 166 - -
Gabi4491g00001 370 Gene3D - 16 362 - -
Gabi4491g00001 370 FunFam Putative cinnamyl alcohol dehydrogenase 6 333 362 - -
Gabi4491g00001 370 Pfam Alcohol dehydrogenase GroES-like domain 38 150 IPR013154 -
Gabi4491g00001 370 Gene3D - 167 332 - -
Gabi4491g00001 370 FunFam Cinnamyl alcohol dehydrogenase 167 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4491g00001 Gabi-Chr4491 7107 9024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4491g00001 11 369 Monolignol Biosynthesis Gene Families AT4G37990 72.145 1.39e-174 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4491g00001 K23232 - gmx:100816901 624.009