Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4490g00002 ATGGATCGCACAACTAAACCCAACGACTCGTTCTCCTACTCCAATCTCTTCAATCTTGAGTCTTTGATGAACTTTCAACTTCCGCGACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGATGAGAGCAGAGATAACCAAGGTGGTGGGGCAATTGCAAATCACAGTAACGGGAATGTGAATTCGTTGAAGACTAGGGCGTGGTCTCAAAACAGTGATGATGAGGAAAAGGGCAGATTTTGTGGGACGTACATGACAGAGGAGCGATATCGATCAATGCTTGGAGACCATGTTCGGAAATACAAAAGGAGGAGTAAGGATGCCTCGCCTAGTCCTGCTCAAAATCGGGTTGCTATTCCGCTTGTCAAAAGTAACACTGGCTTAAGAGCTCGAAAGTCAGGGAATGATCACAGAGGAGGATTGCATGCTGCTGAAACTGCTTCTGAATGGCTATATGATTCCAATTCTCAGAAATCAGGAAACTGCCGTGATGCAGATTTTGTGCAGCAATATGGAACTGATAGGATTATGTATGAACCTGCTTATTTGGACATTGGAGATGGTATCAGTTACAGGATTCCTCCAGTTTATGATAAGTTGGCGTCAATGGTGAACCTCCCAAGTTTCTCAGATATACGTGTGGAGGAATTTTACTTAAAGGGTACCTTGGATTTGGGGTCCTTGGCTGCAATGATGGCTGCTGATAAAAGTTTTGGTACTAGAAACCGAGCAGGCATGGGGGAACCCCTTTCCCAATATGAATCACTTCAGGCACGAATAAAGGCCGTGTCAGCTTCGAATTCACCTCATAAATTCAGCCTTAAAGTGTCTGATGTTGATTTGAATTCCTCCATTCCGGAGGGGGCTGCTGGAAGCATAAAGCGAGTTATTTTGTCTGAGGGTGGTGTATTGCAGGTCTATTATGTTAAGGTTTTGGAAAAAGGTGACTTCTATGAGATCATTGAGCGTAGCCTGCCTAAGAAGCAGAAGGTAAAAAAAGACCCTGCTTCCTTTGAGAAGGAGGTAATGGATAGAATTGGAAAGATTTGGGTAAACATTGTAAGAAGAGACATGCCAAAGCATCATAGGAATTTTACTACTTTTCATCGAAAGCAACTCATTGATGCCAAGAGGTTCTCAGAGAACTGTCAAAGAGAGGTTAAATTCAAAGTTAGTAGATCACTTAAATGGATTAGGGGTGCCAGTATTCGCACCAGGAAACTAGCAAGAGACATGTTGCTGTTCTGGAAACGAGTAGATAAGGAGATGATCGAAGTGAGGAAAAGAGAAGAGAAAGAAGCTGCTGAAGCTTTGAGACGTGAACAGGAGCTTCGAGAAGCCAAGAGGCAGCAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAAACTTACTATCGTCTGAAGCTTTACCCATGGTAGAAGAAAAAACAAATGATCAAGATGCAGTGTCCAACTCTTCAGATGCTGGACCTAGTGAGGAGGAAGATCCAGAAGAGGCTGAATTAAACAAGGAAGCTTTGAAGGCTGCTCAAGATGCAGCCTCTAAGCAGAGAAGGTTGACAAGCGCTTTTGACAGTGAATGCTTGAGGCTGCGCCAGGCAGATGAAACTGATTCACTTTCACAGGATGTGGCAGGAGCGAGTAACATTGATTTGCAAACCCCCTCAACCATGCCAGTGGCATCCACAGTTCGGACTCCAGAATTATTTAAAGGTTGTCTAAAAGAATATCAGCTAAAAGGTCTTCAATGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGACTTGGAAAGACTATCCAGGCTATGGCATTTTTAGCTCATTTAGCTGAGGAGAAAAACATATGGGGGCCTTTTCTGGTTGTTGCACCTGCTTCTGTATTAAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGATCTTAAAAGATTTCCTTATTGGGGAGCAGAGCGGACGGTACTTAGAAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCTAAATTCCACGTGCTCATCACAAGCTATCAGCTCTTAGTAACTGATGAGAAGTTTTTTCGCCGTGTGAAATGGCAGTACATGGTTTTAGATGAAGCGCAGGCAATCAAAAGTTCAAACAGCATAAGGTGGAAGACACTCCTCAGCTTTAATTGTCGGAATCGCCTACTGCTGACTGGTACACCTATTCAGAATAATATGGCAGAGTTATGGGCTCTTCTGCATTTCATTATGCCAACTTTGTTTGACAGCCATGAGCAGTTTAATGAGTGGTTCTCTAAAGGAATTGAGAACCATGCAGAACATGGAGGTACTTTGAATGAGCACCAACTTAATAGATTGCATTCAATTCTAAAACCTTTCATGCTACGACGTGTTAAAAAAGATGTAGTATCTGAGCTGACGAGGAAAACTGAGGTTATGGTACATTGCAAATTGAGTTCTCGGCAGGAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAGCTGTTTGATAGTAATCGTGGGCAGCTCAATGAAAAGAGAATTCTGAATTTAATGAATATTGTTATTCAACTACGGAAGGTTTGCAACCATCCAGAGTTATTCGAAAGGAGTGAGGGAAGTACATACTTTTACTTTGGAGAGATTCCAAATTCTCTTCCACCACCTCCATTTGGGGAGTTGGAGGATGTATACTATGCTGGAGGTCACAACCCCATATCATATGAGATACCAAAACTTGTCTATCAAGAGATTATGCAAAGTTCTGAAACTTTCAGTTCCACTGTTGGTCGTGGTGTCTGCAGAGAATCTTTTCAGAAACATTTTAATATTTTTAGAGCTGAAAATGTTCATCAATCTATCTTCTCAAAAGATATGATTGTTAAAAGTGGAACTTTTGGTTTTGCCCATTTGATGGATTTGTCTCCCCCAGAGGTGACTTTTCTGGCAACTGGTTCTTTTATGGAGCGACTATTGTTTTCTATGATTAAATGGGAGCAGAAGTTCCCTGATGACATTGTAGACTTTCTCATGGAGACCATAATAGATGATCCTGAATGTAGTTACCTTGAGAAAGGTAAAGTGAGGGCTGTTACACGAATGTTATTGCTGCCATCAAGATCTGATTCCAAGTTTCTTCAAAAAAGATTTGCAACTGGGCTGGCCCATGCTCCTTTTGAGGCCTTGGTCATCTCACATCAGGATAGGATTTTATCTAACGCAAGACTTCTTCACTCAGCATACACATATATCCCACCGACTCGAGCTCCCCCAATTGGTGCTCACTGCTCAGATAGAAACTTCTCCTATAAAATGACTGAAGAATTACATTATCCTTGGCTTAAGAGGTTGTTTTTGGGATTTGCACGGACATCTGAACGTAATGGGCCTAGAAAACCTGCTCATCCTCAACAATTAATTCAAGAGATTGATTCTGAATTATCTGTTTCACAGCCTGCACTTCAGTTAACACACAGTATTTTTGGCTCATCACCACCTATGCGGAGTTTCGACCCAGCAAAGTTGCTCACTGACTCTGGGAAACTTCAAACACTAGATATATTATTGAGACGCTTACGAGCTGGAAATCATCGCATTCTCTTGTTTGCTCAGATGACCAAGATGCTGAATATTTTGGAGGACTACATGAACTATAGGAAATATAAGTATTTTAGACTTGATGGTTCATCTACTATTCAGGATCGCAGAGACATGGTCAGAGACTTCCAGCATAGGAGTGATATTTTTGTGTTCTTACTGAGTACGAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCCGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCAAGTCAGAAAAGTACTGTGCAGAACCTTGTCATGACTGGTGGTTCTGTTGGCGGTGATCTCTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTGGATGATGTCCAATTGCAACAGAAATTAAAGGAAATCCCTCTCCAGATGGAATTTTCTGCTACCGCTGCCAATTATGTTACTCAACTGAATATGCTTCCAATGCTTAATGGGGCAAATTTCAAGCTGTGGAAAGAGAATGTGGAAATTGTTCTCGGCTGCATGGATCTCGACAATGCGCTAAGGACTGAGAAACCCACTTCCACTCAGGAAAATCCAAACACGGATAAAATTGAGAAGTGGGAACGCTCAAATCGCATGTGTTTGATGATCATGAAACGTTCCGTTCCGGAGGCGTTTAGGGGCTCGATTGTTGAGACTACTAATGCCAAGTTGTTTCTTAAGGAACTCGAGCAATACTTTGCTCGAAATGAAAAAGGCTGA 4482 0.4172 MDRTTKPNDSFSYSNLFNLESLMNFQLPRQDDDFDYYGNSSQDDESRDNQGGGAIANHSNGNVNSLKTRAWSQNSDDEEKGRFCGTYMTEERYRSMLGDHVRKYKRRSKDASPSPAQNRVAIPLVKSNTGLRARKSGNDHRGGLHAAETASEWLYDSNSQKSGNCRDADFVQQYGTDRIMYEPAYLDIGDGISYRIPPVYDKLASMVNLPSFSDIRVEEFYLKGTLDLGSLAAMMAADKSFGTRNRAGMGEPLSQYESLQARIKAVSASNSPHKFSLKVSDVDLNSSIPEGAAGSIKRVILSEGGVLQVYYVKVLEKGDFYEIIERSLPKKQKVKKDPASFEKEVMDRIGKIWVNIVRRDMPKHHRNFTTFHRKQLIDAKRFSENCQREVKFKVSRSLKWIRGASIRTRKLARDMLLFWKRVDKEMIEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSEALPMVEEKTNDQDAVSNSSDAGPSEEEDPEEAELNKEALKAAQDAASKQRRLTSAFDSECLRLRQADETDSLSQDVAGASNIDLQTPSTMPVASTVRTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPDLKRFPYWGAERTVLRKSINPKDLYRREAKFHVLITSYQLLVTDEKFFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTRKTEVMVHCKLSSRQEAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYFYFGEIPNSLPPPPFGELEDVYYAGGHNPISYEIPKLVYQEIMQSSETFSSTVGRGVCRESFQKHFNIFRAENVHQSIFSKDMIVKSGTFGFAHLMDLSPPEVTFLATGSFMERLLFSMIKWEQKFPDDIVDFLMETIIDDPECSYLEKGKVRAVTRMLLLPSRSDSKFLQKRFATGLAHAPFEALVISHQDRILSNARLLHSAYTYIPPTRAPPIGAHCSDRNFSYKMTEELHYPWLKRLFLGFARTSERNGPRKPAHPQQLIQEIDSELSVSQPALQLTHSIFGSSPPMRSFDPAKLLTDSGKLQTLDILLRRLRAGNHRILLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKLKEIPLQMEFSATAANYVTQLNMLPMLNGANFKLWKENVEIVLGCMDLDNALRTEKPTSTQENPNTDKIEKWERSNRMCLMIMKRSVPEAFRGSIVETTNAKLFLKELEQYFARNEKG 1493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4490g00002 1493 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 599 768 IPR014001 -
Gabi4490g00002 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 571 813 IPR027417 -
Gabi4490g00002 1493 Gene3D - 823 892 IPR027417 -
Gabi4490g00002 1493 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1203 1353 IPR001650 -
Gabi4490g00002 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 815 1398 IPR027417 -
Gabi4490g00002 1493 PANTHER HELICASE SRCAP-RELATED 78 532 - -
Gabi4490g00002 1493 SMART helicmild6 1229 1312 IPR001650 -
Gabi4490g00002 1493 FunFam Putative DNA helicase INO80 559 835 - -
Gabi4490g00002 1493 Gene3D - 1167 1383 IPR027417 -
Gabi4490g00002 1493 Pfam DNA-binding domain 348 476 IPR020838 GO:0003677
Gabi4490g00002 1493 MobiDBLite consensus disorder prediction 43 62 - -
Gabi4490g00002 1493 Coils Coil 424 463 - -
Gabi4490g00002 1493 Pfam Helicase conserved C-terminal domain 1203 1312 IPR001650 -
Gabi4490g00002 1493 MobiDBLite consensus disorder prediction 33 62 - -
Gabi4490g00002 1493 CDD SF2_C_SNF 1191 1323 - -
Gabi4490g00002 1493 ProSiteProfiles DBINO domain profile. 352 477 IPR020838 GO:0003677
Gabi4490g00002 1493 SMART ultradead3 583 776 IPR014001 -
Gabi4490g00002 1493 Gene3D - 583 822 IPR038718 -
Gabi4490g00002 1493 MobiDBLite consensus disorder prediction 487 524 - -
Gabi4490g00002 1493 Pfam SNF2-related domain 602 887 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4490g00002 Gabi-Chr4490 58842 86187 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4490g00002 608 895 RAD5 or RAD16-like Gene Family AT5G43530 28.743 1.22e-26 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi4490g00002 SNF2_N 7.3e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4490g00002 K11665 - gmx:100780615 2316.58