Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4490g00001 ATGGCTTCTTCCTCATCTATTGGTGCTCCTCAAGCAAAGCATGATGTTTTTCTCAGCTTTAGAGGGGAAGATACTCGTTGCACTTTTACAAGCCATCTCTATGCTGCCTTGCGTAGATGTAAAATCGCTACTTTCATTGACGATGAGGAAATTAAGAGAGGGGATAAAATATCACCAACACTTCTTTCAGCAATTGAGAGCTCAAAGATTTCCATAACAATTTTCTCAGAGAATTATGCTTCTTCTACATGGTGTTTGGATGAACTCGAGAGAATCATTGAATGCAAGGAGAAAAAACAACTTGTTGTAATACCTGTTTTTTATCACATCGATCCATCACATGTAAGACACCAGAGGGGAACTTATGAAGTTGCATTTACAAAACATGAGGAACATTTTAGGGACAATCCAATCAAGGTACAGAATTGGAGAACTGCTCTGCATGAAGCAGCCAACTCAGCAGGATGGGATTCCTCAAATATTAGGTTGGAGGCTGAACTGGTTGAAAAAATTGTTGAAGATATATTACAAAAGTTGAATCGCATGAGCCCACATGTTCCAAAGGGGCTTGTTGGAGTTACTGCACACATTGGACATGTGGAATCATTGTTATGCACAGGGTCCTCTGGCTTACGTATTATTGGAATTTGGGGCATGGGGGGTATAGGTAAGACAACCATTGCAGATGCTCTATGTGCAAAACTCTCTTCTCAATATGAGGGATGCTACTTTGTCAATGTGAGAGAAGAACGGAAAAATCATAGAGAAAATGATTTTCGGAGTAAACTTCTGACTGGAATATTAGGGGACCCAAATTTGTATATTAGCACTCCTACTATGAGTTCCACTTTTGTTAAAGAAAGGCTCCAACGTAAAAATGTCCTCATCGTTCTTGATGATGTCAGTGATTCAAAACAAATAGAATATCTTGTTGGAGAGAAAGATTGGTTAGGACCTGGTAGTAGAATCATAGTGACCACTAGAAGTAAAGATGTGTTTAACAGGGGAGTTGATGGAGTATACCAAATGATGGAGTTGAATTCTGATGAAGCGTTAAAGCTTTTTTGCTTGAATGCCTTTCAACAAGACCATCCAACGAGGGAATATAGACACTTGTCAGAAAGGGCAGTAAATTATGCTAAGGGCATTCCATTAGCACTAAAAGTTTTGGGTTCATTACTTCATTCCAAACCACCAAGAGAATGGGAACGTGTGTTGGATAAACTCAAGAAAATTCCCCGAGCAGAAATTTATGGTGTGCTAGGATTGAGTTATGAAGGATTAGACCACGAAGAGCAGAATATATTTTTAGATATTGCATGTTGTTTCAAAGGAGAGACAAAATGCCGTATAACAAGTATATTAGATGGCTGTGGCTTTTCTACAGATGTTGGGATCAGATGCCTTCAAGATAAATCTCTTATAACTGTGTCTAAAGACAACAAGGTACAGATGCATGATTTGATACAAGAAATGGGTTGGCAAATCGTCCGTGAAGAATCTCTGAAAGAACCTGGAAAGCGAAGTCGATTGTGGGATCCTAAAGAAATTTTTGATGTCCTCAAGAATAACAGGGGTACTGAGTCCATTGAAAGCATAGTGTTGGACATGTCTCTAATCAAACATGTCACCTTAAACCCTCAAACTTTTCACAGAATGCACAAGCAAAGGATTTTAAAGTTTTATATGCCCTCATTCGATGAGAGAAGCAAAGTGCATATTTCCAGAGGTCTTGAATGTATGCCTGATGAATTAACTTATCTCCGATGGGACTGTTTTCCATTGAAATCCTTGCCACCATCGTTTTGTGCAGAGAAGCTTGTTGAACTTGATCTAAAACATAGCCTCATTGAAAAACTTTGGGACGGAATGCAGGATCTTTTGAATTTGAAGTCATTATATCTAAGTGATTGCAAGCATCTGATTGAGCTCCCAGATTTCTCTATGGCTTTAAAACTTGAAGAAGTACATCTTGATGGTTGTACAAGTTTGATGAAAGTTCCTTCATCCATTTTGTCACTTGATAGTCTGTTTGCACTAAATCTGAGAGGCTGTAAACAACTTTGCTACATTCAAAGTGAGAAGCAATCTAGATCTCTTCAATGGCTTACTCTCAGTGGGTGCTCGAGACTTGAAAAATTTTCAGTCTCTTCAGAGAAATTGAAATACATGGTCTTAGATGCAACAGCAATTGAAAAATTGCCTCCAATATTTGACACCTCATTGTCAATCACAAAACTCTTTCTGGATAATTGTTCAAATTTATCAGAACTCCCTGACAACCTTGGCCTGTTATCAACGTTAAATAAACTTTCGTTAAGAGGAAGCAATATTGAGAACTTACCTGATACCATAAAAAATCTTTCTCAGTTGAGAGATCTCAATGTAAGCAATTGCAGGAGGCTTCGTTCCTTGCCAGAGCTTCCATTCTTTTTACAGGACTTGAATGCAAGTAATTGTGTTTCCCTAGAAACAGTATCAAATTTAGGGATCACGCTTTTGCAAGAGTCTTTTGGCAGGATAAAGAAGACATCATTGATCAGACAGATTCAAGAAGAAGAAAAAATGTCTATTCGTCATCGTAACTATTTGTGGAGGTTCGAGTTTTATAATTGCATAAAGTTGGATCAGATTGCAAGCAACAATGTTATGGAAGAGGCACTAATTAGAATTCAGCTCGCAGCCTACCTGTCATCAAGGATTGAAGTAATATGTGATTCTTATTTTCAAACTGATGAAGTTTTTAAAATGGATGACCCTGAAGATTTTATATATGTTTCCCGTCCGGTTTACATTATTCTACCGGGAAGTGAAGTGCCAAATTGGTTCACACATAAAAGAACAGACTCCTCAACTTCAAAACTTTTTGTACAGTGTTATCCTTGTCACAGTTACATGGGCTTTGCTTTCTGCCTTGTTCTAGGACCAATGCACTCAAACAGGGAGAAAAATCATCATAATGGTTTTGTGGCAGGGTGCAGATACTATTTTGAAGACACATATGTGGGAACTTGCATGATAAATTCTTCTTGCAATAATGCTGAATCGGATCAGGTATGGCTCTGGTATGAAAAATTAAAAGTTGTAGAGGGAAAAAGCTATGAATATCATAGTACTTTCTCTAAGAATGTCTCCTTTGAATTTTTTGTTCGACCTCAAAGTTCAGGACTTGTCGTGAAACAGTGTGGAATTCGACCATTGTATCATGCACATGTCATCATGCAAAGCTCAAATGAACAAGAAGGTGGCAGAGAAGATAAGAGATCTTACAGTCAGTCTGAAGCCTACGAAATTCGAAGGAAGTATGTGCTTTTGCGGTCGTATGTTCTTCCTCCATCACAATCAAAGAGACAAAGAATTCATGGGTATCATAATGGACATCTTGGGATACCCTTTTCATCAGTTTATTCTGCCAAGTATGTTTCTGAACTTGCAATGCAACATCACCGTTCTGGTAGTTTAGATGAAGTACTTGTTCATTTTGGCCTTGTTAGTTTCTACCACCAACGTGATGTGTCTATGCAACTTGCTCTGCGGTGTTTAGCACAACTGCTGCTGGATGACTATTGTTATTTAGGCAAACTCCTAGACAATATCAACATCTTATCATCGTTGAGAAGATTGTCAATACATGGTGGCAATTTTGAGAGCTTGCCTGCAAGCATCAAGCTTCTTTCAAGGCTGGAACGTCTTTCAATAAATGAGTGCAAGAGGCTTAGGTCTCTACCAAAGCTTCCATTATCACTTCAATGTTTAGTTGCCGATAATTGCACATCTCTGGAGACAGTTGAGTTAGCTCAGGAAAACAAGCTGGTATTTTTTGGAAAGTCACACGATCCAATGGTATTTTCTCCAATTTCTATATATGAAAAAGTATGGAGAATTGAAGTTATTGACCCAGAAAGAAGAGTTACGAAGTGGCACATGTTAATGTCACCAAATGATCCCATATCTGTTGAATTCAGTATTGCTTCACATATCGAGCTGTTGAATGTCACGTGTGTATCCGGCACAATAAAAATTACCACCAAGTGA 4035 0.3831 MASSSSIGAPQAKHDVFLSFRGEDTRCTFTSHLYAALRRCKIATFIDDEEIKRGDKISPTLLSAIESSKISITIFSENYASSTWCLDELERIIECKEKKQLVVIPVFYHIDPSHVRHQRGTYEVAFTKHEEHFRDNPIKVQNWRTALHEAANSAGWDSSNIRLEAELVEKIVEDILQKLNRMSPHVPKGLVGVTAHIGHVESLLCTGSSGLRIIGIWGMGGIGKTTIADALCAKLSSQYEGCYFVNVREERKNHRENDFRSKLLTGILGDPNLYISTPTMSSTFVKERLQRKNVLIVLDDVSDSKQIEYLVGEKDWLGPGSRIIVTTRSKDVFNRGVDGVYQMMELNSDEALKLFCLNAFQQDHPTREYRHLSERAVNYAKGIPLALKVLGSLLHSKPPREWERVLDKLKKIPRAEIYGVLGLSYEGLDHEEQNIFLDIACCFKGETKCRITSILDGCGFSTDVGIRCLQDKSLITVSKDNKVQMHDLIQEMGWQIVREESLKEPGKRSRLWDPKEIFDVLKNNRGTESIESIVLDMSLIKHVTLNPQTFHRMHKQRILKFYMPSFDERSKVHISRGLECMPDELTYLRWDCFPLKSLPPSFCAEKLVELDLKHSLIEKLWDGMQDLLNLKSLYLSDCKHLIELPDFSMALKLEEVHLDGCTSLMKVPSSILSLDSLFALNLRGCKQLCYIQSEKQSRSLQWLTLSGCSRLEKFSVSSEKLKYMVLDATAIEKLPPIFDTSLSITKLFLDNCSNLSELPDNLGLLSTLNKLSLRGSNIENLPDTIKNLSQLRDLNVSNCRRLRSLPELPFFLQDLNASNCVSLETVSNLGITLLQESFGRIKKTSLIRQIQEEEKMSIRHRNYLWRFEFYNCIKLDQIASNNVMEEALIRIQLAAYLSSRIEVICDSYFQTDEVFKMDDPEDFIYVSRPVYIILPGSEVPNWFTHKRTDSSTSKLFVQCYPCHSYMGFAFCLVLGPMHSNREKNHHNGFVAGCRYYFEDTYVGTCMINSSCNNAESDQVWLWYEKLKVVEGKSYEYHSTFSKNVSFEFFVRPQSSGLVVKQCGIRPLYHAHVIMQSSNEQEGGREDKRSYSQSEAYEIRRKYVLLRSYVLPPSQSKRQRIHGYHNGHLGIPFSSVYSAKYVSELAMQHHRSGSLDEVLVHFGLVSFYHQRDVSMQLALRCLAQLLLDDYCYLGKLLDNINILSSLRRLSIHGGNFESLPASIKLLSRLERLSINECKRLRSLPKLPLSLQCLVADNCTSLETVELAQENKLVFFGKSHDPMVFSPISIYEKVWRIEVIDPERRVTKWHMLMSPNDPISVEFSIASHIELLNVTCVSGTIKITTK 1344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4490g00001 1344 SUPERFAMILY L domain-like 1176 1263 - -
Gabi4490g00001 1344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 439 IPR027417 -
Gabi4490g00001 1344 Gene3D - 345 429 IPR042197 -
Gabi4490g00001 1344 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 156 IPR035897 -
Gabi4490g00001 1344 Gene3D Ribonuclease Inhibitor 520 696 IPR032675 -
Gabi4490g00001 1344 Gene3D Ribonuclease Inhibitor 1124 1274 IPR032675 -
Gabi4490g00001 1344 Gene3D Ribonuclease Inhibitor 697 861 IPR032675 -
Gabi4490g00001 1344 SUPERFAMILY L domain-like 535 836 - -
Gabi4490g00001 1344 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Gabi4490g00001 1344 Gene3D - 11 177 IPR035897 -
Gabi4490g00001 1344 Pfam C-JID domain 934 1070 IPR045344 -
Gabi4490g00001 1344 Pfam NB-ARC domain 196 412 IPR002182 GO:0043531
Gabi4490g00001 1344 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 715 IPR044974 GO:0006952
Gabi4490g00001 1344 SUPERFAMILY "Winged helix" DNA-binding domain 416 522 IPR036390 -
Gabi4490g00001 1344 Pfam TIR domain 13 185 IPR000157 GO:0007165
Gabi4490g00001 1344 PRINTS Disease resistance protein signature 288 302 - -
Gabi4490g00001 1344 PRINTS Disease resistance protein signature 380 394 - -
Gabi4490g00001 1344 PRINTS Disease resistance protein signature 213 228 - -
Gabi4490g00001 1344 PRINTS Disease resistance protein signature 786 802 - -
Gabi4490g00001 1344 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 181 - -
Gabi4490g00001 1344 Gene3D - 178 338 IPR027417 -
Gabi4490g00001 1344 SMART till_3 13 153 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4490g00001 Gabi-Chr4490 39076 50221 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4490g00001 14 817 WRKY Transcription Factor Family AT4G12020 34.681 4.20e-116 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4490g00001 - - tpra:123891409 1688.7