Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi448g00011 ATGCATCCACCGTTGAAGAGGGTCAATTTCTGCAGAGGAGACAAGGTGGAGGTTTGCAGCAAAGAAGAAGGGTTTCTCGGTTCCTATTACGAAGCCACCATTGTTTCCCACCTTGACAATGGCCTCTACGTTGTTCGCTACAAGAACCTTCTCGAGGACAACGAGTCTCAGCCTCTCACCGAAACCCTTTATCCCAAGGAGCTTCGTCCATTGCCACCTCGTGTCCACGCTTCTCAGTTTGCGCTCTATCAAAAAGTCGATGCTTTCGACAACGATGGTTGGTGGGTTGGTTCGATCACTGGCAGATCTGGTTCTCACTACTACGTGTACTTTTCTACCACAAACGAAGAGATAGCGTACCCTTCTTCTCATATCAGGGTTCATGCTGCGTTGAATAGAATTCTGTTTGAGGGCGAAGATTGA 423 0.4823 MHPPLKRVNFCRGDKVEVCSKEEGFLGSYYEATIVSHLDNGLYVVRYKNLLEDNESQPLTETLYPKELRPLPPRVHASQFALYQKVDAFDNDGWWVGSITGRSGSHYYVYFSTTNEEIAYPSSHIRVHAALNRILFEGED 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi448g00011 140 CDD Tudor_Agenet_AtDUF_rpt1_3 10 73 - -
Gabi448g00011 140 Pfam Agenet domain 13 73 IPR008395 -
Gabi448g00011 140 CDD Tudor_Agenet_AtDUF_rpt2_4 84 127 - -
Gabi448g00011 140 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 129 - -
Gabi448g00011 140 SMART agenet_At_2 78 133 IPR014002 -
Gabi448g00011 140 SMART agenet_At_2 8 76 IPR014002 -
Gabi448g00011 140 Gene3D - 2 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi448g00011 Gabi-Chr448 108897 109319 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi448g00011 20 132 PHD Transcription Factor Family AT5G58610 28.889 1.77e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi448g00011 - - gmx:106794115 201.06