Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi448g00010 ATGCGTCCACCGTTGAAGAGGGTCAATTTCTGCAGAGGAGACAAGGTTGAGGTTTGCAGCAAAGAAGAAGGGTTTCTCGGTTCCTATTACGAAGCCACCATTGTTTCCCACCTTGACAATGGCCTCTACGTTGTTCGCTACAAGAACCTTCTCGAGGACAACGAGTCTCAGCCTCTCACCGAAACCCTTTATCCCAAGGAGCTTCGTCCATTGCCACCTCGTGTCCACGCTTCTCAGTTTGCGCCCTATCAGAAAGTCGATGCTTTCGACAACTATGGTTGGTGGGTTGGTTCGATCACTGGCAGATCTGGTTCTCACTACTACGTGTACTTTTCTACCACAAACGAAGAGATAGCGTACCCTTCTTCTCATATCAGGGTTCATCATGAATGGGATAACGGGAATTGGATTTTTTTGAATTAA 423 0.4728 MRPPLKRVNFCRGDKVEVCSKEEGFLGSYYEATIVSHLDNGLYVVRYKNLLEDNESQPLTETLYPKELRPLPPRVHASQFAPYQKVDAFDNYGWWVGSITGRSGSHYYVYFSTTNEEIAYPSSHIRVHHEWDNGNWIFLN 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi448g00010 140 CDD Tudor_Agenet_AtDUF_rpt1_3 10 73 - -
Gabi448g00010 140 Gene3D - 2 81 - -
Gabi448g00010 140 SMART agenet_At_2 78 133 IPR014002 -
Gabi448g00010 140 SMART agenet_At_2 8 76 IPR014002 -
Gabi448g00010 140 CDD Tudor_Agenet_AtDUF_rpt2_4 84 127 - -
Gabi448g00010 140 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 138 - -
Gabi448g00010 140 Pfam Agenet domain 13 73 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi448g00010 Gabi-Chr448 106163 106585 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi448g00010 20 140 PHD Transcription Factor Family AT5G58610 27.815 6.96e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi448g00010 - - gmx:106794115 215.698