Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi448g00009 ATGCGTCCACCGTTGAAGAGGGTCAATTTCTGCAGAGGAGACAAGGTTGAGGTTTGCAGCAAAGAAGAAGGGTTTCTCGGTTCCTATTACGAAGCCACCATTGTTTCTAGGCCCATTTTGCCGGCCCTAATTGTTTCCCACCTTGACAATGGCCTCTACGTTGTTCGCTACAAGAACCTTCTCGAGGACAACGAGTCTCAGCCTCTCACCGAAACCCTTTATCCCAAGGAGCTTCGTCCATTGCCACCTCATGTCCACGCTTCTCAGTTTGCGCTCTATCAGAAAGTCGATGCTTTCGACAACGATGGTTGGTGGGTTGGTTCGATCACTGGCAGATCTGGTTCTCACTACTACGTGTACTTTTCTACCACAAACGAAGAGATAGCGTACCCTTCTTCTCATATCAGGGTTCATCATGAATGGGTTAACGGGAATTGGGTTTTTTTGAATTAA 453 0.4746 MRPPLKRVNFCRGDKVEVCSKEEGFLGSYYEATIVSRPILPALIVSHLDNGLYVVRYKNLLEDNESQPLTETLYPKELRPLPPHVHASQFALYQKVDAFDNDGWWVGSITGRSGSHYYVYFSTTNEEIAYPSSHIRVHHEWVNGNWVFLN 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi448g00009 150 Pfam Agenet domain 13 83 IPR008395 -
Gabi448g00009 150 CDD Tudor_Agenet_AtDUF_rpt1_3 10 83 - -
Gabi448g00009 150 CDD Tudor_Agenet_AtDUF_rpt2_4 94 137 - -
Gabi448g00009 150 SMART agenet_At_2 88 143 IPR014002 -
Gabi448g00009 150 SMART agenet_At_2 8 86 IPR014002 -
Gabi448g00009 150 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi448g00009 Gabi-Chr448 95722 96808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi448g00009 20 150 PHD Transcription Factor Family AT5G58610 26.708 2.17e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi448g00009 - - gmx:106794115 213.386