Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi448g00008 ATGGGCTGGCGGGTTTGGCGGGGCCGAAAAGCCACCATTGTTTCCCACCTTGACAATGGCCTCTACGTTGTTCGCTACAAGAACCTTCTCGAGGACAACGAGTCTCAGCCTCTCACCGAAACCCTTTATCCCAAGGAGCTTCGTCCATTGCCACCTCGTGTCCACGCTTCTCAGTTTGCGCTCTATCAGAAAGTCGATGCTTTCGACAACGATGGTTGGTGGGTTGGTTCGATCACTGGCAGATCTGGTTCTCACTACTACGTGTACTTTTCTACCACAAACGAAGAGATAGCGTACCCTTCTTCTCATATCAGGGTTCATCATGAATGGGATCAATGCTGTAATGGGTTTTTCTTTCTTTCTTTTCATTCATCTGTGGGTTTGGAAATTCCACATAGGTTTATGGGTCTGTAA 414 0.4783 MGWRVWRGRKATIVSHLDNGLYVVRYKNLLEDNESQPLTETLYPKELRPLPPRVHASQFALYQKVDAFDNDGWWVGSITGRSGSHYYVYFSTTNEEIAYPSSHIRVHHEWDQCCNGFFFLSFHSSVGLEIPHRFMGL 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi448g00008 137 CDD Tudor_Agenet_AtDUF_rpt2_4 63 106 - -
Gabi448g00008 137 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 111 - -
Gabi448g00008 137 SMART agenet_At_2 57 112 IPR014002 -
Gabi448g00008 137 Pfam Agenet domain 9 52 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi448g00008 Gabi-Chr448 93073 93549 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi448g00008 11 112 PHD Transcription Factor Family AT5G58610 25.000 1.69e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi448g00008 - - gmx:121175082 159.458