Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4489g00013 ATGTGCTGTGGAGATATCTTGCATTTGTCAGAATCCAAGTGCAAGTCATGCAACCACGTAACAACCACTGATGATGTTGAAGACTGGGTGTACAACCAGTTGGAGAACACGACTCATCTTTTACATGGTGTTGTCCATGCCAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGGTCTAGATTTCTTTCTGGTTGCCATATCATGGATTTCTGGGATCGTCTATGCAACACACTTGGAGTCAGAAAAGTTAGCGTGATGGATGTTTCGAAGAAATATGCACTGGAGTACCGCTTGCTCCATGCCATTATGAAGGGACATCCGTGGTATGGTGACTGGGGTTATAAATTTGGCTCTGGTAGCTATTGTCTCACAGAGGAAGCATACAAGTCCGCTGTTGAAAGCCTATCCAATCTACCTCTGTCCATCTTCCTCTCCCAGGGACAAAAGCCCAACTCTCGTGCACATGACATGATTTCATATTACCAGTCTTTGTCTGACCACGAGCTTGTAAATATAAGAGACCTCTTTTGTTTTCTGATGGGTTTGATCCATGATGCTCGCAAGACTGCGTTAAAGGATGGTGGCATAACCTGCAAGAAGCGCCGTTTCAATGCTTCTGGACTGTCAAGTTCTTGGGAGAAGAGTGATGTCGAACGGGTGGAGGAAGCTATGATCAGAGTGCTGCGTGCAGTGTCTGGGTCTAATTGGGTGAGCTGGCGTTCTCTTCGGGGTGCTGTCTGCAAGGTGGCCTCTCCAGAGTTGCTTGATTATTGCCTTGGAGAACTGGGTGGAAAATTGGTCTATGGTGGAATGGTTGTTAATAGTCGATGCAATCCTCAAACTGGAGTTTTTGAGTTAAGACTTGAGGCTGCAAATGGTTCTTGCTATGGAAGTATAACGAACAATAATTCTTCAGGCTCAAAGTATCCATCTGAAGAGAATCTCCTGCAATGTCTCAGATATTTATACGATTCTTTGCTTCATCCTCAGATGATGCTAAACAGTGTTGCGGAAGGGACATGGACTCTTGCAATGAGTTCAGCTCAGAAACTTCTTGACTGCAAGCAGTTTGTAAAAGATTATACTCCTGAGATAGTGCCAATGTCAGATTTGTATAAAATACGCATCTCATGTCAGGTTGAACTTGTGGACGAATCTGAAGATTCTGCAGCTCCGCCAGAAATAGTTGTGCTGCCCACGAATGCTACTGTGTCTGACCTTAAGATTGAAGCAGCAAATGCTTTTCAAGATGTATATTTAATGTTTAGAAGATTTCAAGTTGATGAGCTACTTGGCTATAGCGGTGTAGACGATTCCACCCAGGTCAAGCTCTTGTTAGGATCGAAAGAAATGGTTTGTGTCCGCGGAAGATGCATTGGGAAGAATGGGTTGAGCAAGTTCCGAATGGAACGGGGACTTGAGAGGTGGACTGTAGATTGCAGCTGTGGCGCTAAGGATGATGATGGGGAGAGAATGATGGCTTGTGATATTTGTGGAGTGTGGCGGCACACTAGGTGTTCTGACATTCATGATACTGATCCTGTTCCTGCATGTTTTGTTTGCCTGAGATGCCAAAACTCTGACTCGAAACCTAAATCTAGTGGGCACTGCAAAGATGAGACAGTGACTAACGTAATTAGTACTGGTAATAGTTGCTTTGGTAACGGCTTGCCTGTGCCTTCAGATATTCGTCAAGGCATTGATTAG 1719 0.4479 MCCGDILHLSESKCKSCNHVTTTDDVEDWVYNQLENTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCNTLGVRKVSVMDVSKKYALEYRLLHAIMKGHPWYGDWGYKFGSGSYCLTEEAYKSAVESLSNLPLSIFLSQGQKPNSRAHDMISYYQSLSDHELVNIRDLFCFLMGLIHDARKTALKDGGITCKKRRFNASGLSSSWEKSDVERVEEAMIRVLRAVSGSNWVSWRSLRGAVCKVASPELLDYCLGELGGKLVYGGMVVNSRCNPQTGVFELRLEAANGSCYGSITNNNSSGSKYPSEENLLQCLRYLYDSLLHPQMMLNSVAEGTWTLAMSSAQKLLDCKQFVKDYTPEIVPMSDLYKIRISCQVELVDESEDSAAPPEIVVLPTNATVSDLKIEAANAFQDVYLMFRRFQVDELLGYSGVDDSTQVKLLLGSKEMVCVRGRCIGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMMACDICGVWRHTRCSDIHDTDPVPACFVCLRCQNSDSKPKSSGHCKDETVTNVISTGNSCFGNGLPVPSDIRQGID 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4489g00013 572 ProSitePatterns Uncharacterized protein family UPF0054 signature. 42 52 IPR020549 -
Gabi4489g00013 572 CDD PHD_MMD1_like 483 528 - -
Gabi4489g00013 572 SMART PHD_3 483 529 IPR001965 -
Gabi4489g00013 572 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 469 535 IPR013083 -
Gabi4489g00013 572 SUPERFAMILY FYVE/PHD zinc finger 472 532 IPR011011 -
Gabi4489g00013 572 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 2 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4489g00013 Gabi-Chr4489 68041 72696 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4489g00013 34 528 PHD Transcription Factor Family AT5G22260 30.326 1.96e-72 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4489g00013 K26271 - gmx:100818189 988.408