Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4489g00012 ATGGTCGTCAGCGGAGGGAAACCCCTGAAACGCATGAAGAGGAGAGTCACCGCTGATTTCTACGACTTCCTCTCGTTCCCCTCTCCGGCCCTCGCCGCCTCGGAAAACTTCTCCGGCGGACCCTTCCGATCCAACGTCCGCTCCTTCCTCACCAAGCACGCGCTGCTCCCGCCACCGTCGGCGCTTTTCCCGCACCTGCTGACCTGGCAGATCCTCTTCCGCGTCGGCGAACTCACCGACGGCCCCGAATCGGGCCCCGCGGTGGTGTGCCTCGACGTCGTGGAAGAGGATGTGGCCAGATCCAGATCTGTTTACTGCGATCAGTGCCGAGTTTTCGGATGGAGCGGCCACCCAGTGTGCGGGAAGCGTTACCATTTTATAATCAAGGTTGATGGGAGCTCCATTGGTGGGTACCACAAGCCATGTATGTGCTGTGGAGATATCTTGCATTTGTCAGAATCCAAGTGCAAGTCATGCAACCACGTAACAACCACTGATGATGTTGAAGACTGGGTGTACAACCAGTTGGAGAACACGACTCATCTTTTACATGGTGTTGTCCATGCCAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGGTCTAGATTTCTTTCTGGTTGCCATATCATGGATTTCTGGGATCGTCTATGCAACACACTTGGAGTCAGAAAAGTTAGCGTGATGGATGTTTCGAAGAAATATGCACTGGAGTACCGCTTGCTCCATGCCATTATGAAGGGACATCCGTGGTATGGTGACTGGGGTTATAAATTTGGCTCTGGTAGCTATTGTCTCACAGAGGAAGCATACAAGTCCGCTGTTGAAAGCCTATCCAATCTACCTCTGTCCATCTTCCTCTCCCAGGGACAAAAGCCCAACTCTCGTGCACATGACATGATTTCATATTACCAGTCTTTGTCTGACCACGAGCTTGTAAATATAAGAGACCTCTTTTGTTTTCTGATGGGTTTGATCCATGATGCTCGCAAGACTGCGTTAAAGGATGGTGGCATAACCTGCAAGAAGCGCCGTTTCAATGCTTCTGGACTGTCAAGTTCTTGGGAGAAGAGTGATGTCGAACGGGTGGAGGAAGCTATGATCAGAGTGCTGCGTGCAGTGTCTGGGTCTAATTGGGTGAGCTGGCGTTCTCTTCGGGGTGCTGTCTGCAAGGTGGCCTCTCCAGAGTTGCTTGATTATTGCCTTGGAGAACTGGGTGGAAAATTGGTCTATGGTGGAATGGTTGTTAATAGTCGATGCAATCCTCAAACTGGAGTTTTTGAGTTAAGACTTGAGGCTGCAAATGGTTCTTGCTATGGAAGTATAACGAACAATAATTCTTCAGGCTCAAAGTATCCATCTGAAGAGAATCTCCTGCAATGTCTCAGATATTTATACGATTCTTTGCTTCATCCTCAGATGATGCTAAACAGTGTTGCGGAAGGGACATGGACTCTTGCAATGAGTTCAGCTCAGAAACTTCTTGACTGCAAGCAGTTTGTAAAAGATTATACTCCTGAGATAGTGCCAATGTCAGATTTGTATAAAATACGCATCTCATGTCAGGTTGAACTTGTGGACGAATCTGAAGATTCTGCAGCTCCGCCAGAAATAGTTGTGCTGCCCACGAATGCTACTGTGTCTGACCTTAAGATTGAAGCAGCAAATGCTTTTCAAGATGTATATTTAATGTTTAGAAGATTTCAAGTTGATGAGCTACTTGGCTATAGCGGTGTAGACGATTCCACCCAGGTCAAGCTCTTGTTAGGATCGAAAGAAATGGTTTGTGTCCGCGGAAGATGCATTGGGAAGAATGGGTTGAGCAAGTTCCGAATGGAACGGGGACTTGAGAGGTGGACTGTAGATTGCAGCTGTGGCGCTAAGGATGATGATGGGGAGAGAATGATGGCTTGTGATATTTGTGGAGTGTGGCGGCACACTAGGTGTTCTGACATTCATGATACTGATCCTGTTCCTGCATGTTTTGTTTGCCTGAGATGCCAAAACTCTGACTCGAAACCTAAATCTAGTGGGCACTGCAAAGATGAGACAGTGACTAACGTAATTAGTACTGGTAATAGTTGCTTTGGTAACGGCTTGCCTGTGCCTTCAGATATTCGTCAAGGCATTGATTAG 2145 0.4797 MVVSGGKPLKRMKRRVTADFYDFLSFPSPALAASENFSGGPFRSNVRSFLTKHALLPPPSALFPHLLTWQILFRVGELTDGPESGPAVVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKVDGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYNQLENTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCNTLGVRKVSVMDVSKKYALEYRLLHAIMKGHPWYGDWGYKFGSGSYCLTEEAYKSAVESLSNLPLSIFLSQGQKPNSRAHDMISYYQSLSDHELVNIRDLFCFLMGLIHDARKTALKDGGITCKKRRFNASGLSSSWEKSDVERVEEAMIRVLRAVSGSNWVSWRSLRGAVCKVASPELLDYCLGELGGKLVYGGMVVNSRCNPQTGVFELRLEAANGSCYGSITNNNSSGSKYPSEENLLQCLRYLYDSLLHPQMMLNSVAEGTWTLAMSSAQKLLDCKQFVKDYTPEIVPMSDLYKIRISCQVELVDESEDSAAPPEIVVLPTNATVSDLKIEAANAFQDVYLMFRRFQVDELLGYSGVDDSTQVKLLLGSKEMVCVRGRCIGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMMACDICGVWRHTRCSDIHDTDPVPACFVCLRCQNSDSKPKSSGHCKDETVTNVISTGNSCFGNGLPVPSDIRQGID 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4489g00012 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 677 IPR013083 -
Gabi4489g00012 714 CDD PHD_MMD1_like 625 670 - -
Gabi4489g00012 714 SMART PHD_3 625 671 IPR001965 -
Gabi4489g00012 714 SUPERFAMILY FYVE/PHD zinc finger 614 674 IPR011011 -
Gabi4489g00012 714 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
Gabi4489g00012 714 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4489g00012 Gabi-Chr4489 67511 72695 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4489g00012 86 670 PHD Transcription Factor Family AT5G22260 29.630 2.94e-81 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4489g00012 K26271 - gmx:100818189 1245.72