Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4487g00002 ATGAGCGATCATTTGGTGCTGTATGTGGACCGTCTGGTCCGCCCCGTGCCGGTTGAGCCGCTGACCCAACACCCGGCTCAGCCCTCTCCTGAACCGGTCGATGAGGGGCCCTCCGGTTCTTCTCCGGCGACGGAGGAGGACGAGGAGGAGCCGCTGTTACAGATGGCGGAGTGTCGCATTTGTCAGGAGGAGGACAGCCTCAACAATCTAGAGTCACCCTGCGCCTGCAGCGGCAGTCTTAAGTACGCTCACAGAAAGTGCGTCCAGCATTGGTGCAACGAGAAAGGAGACATTATTTGTGAGATATGTCATAAGCCCTATCAACCTGGTTATACTGCCCCACCACCTCGCCCACAACCCGAAGAAACTACCATTGATATAGGTGGAGGTTGGACAATCTCTGGCACGCCTTTGGACTTGCGTGATCCTCGACTCTTGGCAATTGCAGAGGCAGAACGCCAGTTCTTTGAAGCAGAATATGATGGATATGCTGCTTCTAATGCCAGTGGAGCTGCATTTTGTCGTTCAGCTGTTCTAATTTTTATGGCCCTTTTACTCTTGAGGCATGCACTTTCTGTCCCGGATGCTGATGCTGAAGATGATCCATCCACTTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGTCGCCGACAAAGACAAGAGGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTCGTTCTACAATCAGGGCAGCGAAGGGGTCTGCAGTTTGCCATAACACCTGGACAAACAGTGAATACACACCAGGAACAAGTGTAA 831 0.5138 MSDHLVLYVDRLVRPVPVEPLTQHPAQPSPEPVDEGPSGSSPATEEDEEEPLLQMAECRICQEEDSLNNLESPCACSGSLKYAHRKCVQHWCNEKGDIICEICHKPYQPGYTAPPPRPQPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFFEAEYDGYAASNASGAAFCRSAVLIFMALLLLRHALSVPDADAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAITPGQTVNTHQEQV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4487g00002 276 Pfam Protein of unknown function (DUF3675) 109 227 IPR022143 -
Gabi4487g00002 276 MobiDBLite consensus disorder prediction 18 51 - -
Gabi4487g00002 276 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 237 IPR033275 -
Gabi4487g00002 276 CDD RING_CH-C4HC3_MARCH 58 104 - -
Gabi4487g00002 276 FunFam RING/FYVE/PHD zinc finger protein 46 114 - -
Gabi4487g00002 276 Pfam RING-variant domain 58 103 IPR011016 GO:0008270
Gabi4487g00002 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 113 IPR013083 -
Gabi4487g00002 276 SUPERFAMILY RING/U-box 56 108 - -
Gabi4487g00002 276 ProSiteProfiles Zinc finger RING-CH-type profile. 50 110 IPR011016 GO:0008270
Gabi4487g00002 276 SMART ringv_2 57 104 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4487g00002 Gabi-Chr4487 25179 28259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4487g00002 57 103 C3H Transcription Factor Family AT2G37950 42.000 2.66e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4487g00002 - - ahf:112734090 478.404