Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4487g00001 ATGGACTTGACCTCCAACAATAACCAAAACTTAGATGCAGATACTCAAGCCACACCACCAACCCAACCCACCAACAACAACACTTCAAAGTCTTTATCTTTGACCAACGGCACACACAAGCGCCACCCCACAACCACTGCTCCGCCGCCACAACCACCGTCCATGGTGGTTTCCTACAAGGAATGCCTCAAGAACCATGCTGCCAGCATAGGTGGCCATGCACTTGATGGCTGTGGAGAGTTTATGCCTCCTTCTTCCATCAACCACACTGATCCTCGCTCCCTCAAATGTGCAGCATGTGGTTGCCACCGCAACTTCCACCGCCGTGACCCTCAAGAACACTCCAAAAACCCCACCTTCCTCAGCTGCTTCTACTCCCCTTCAGCCACAGCACCACCACAACCACAACCACCATTACCGTCAAGCCCTTCACCACCACCACTCTCACATTTGCCACCTTCATACCACACTTCAGCACCTCACATGCTCTTAGCACTTGGCACTGCCTTTACCGCTCCCTCTGATGAACAGCATCACAGGAATCTCAACTCATCTTCACTGGTGAAGCCTGAGAATCCAAGTGGGAAGAAGAGGTACAGAACGAAATTCAGCAAGGATCAGAAGGAGAAGATGCATAGCTTCTCTGAGAAATTGGGTTGGAGAATGCAGAAGGGGGATGATGGATTGGTCCAGGAATTCTGCAATAACATTGGAGTCTCTAAAGGGGTCTTCAAGGTTTGGATGCATAATAACAAGAACAATTTTAGGAAGAGATCTGAAGATGGAAATGTTCCTCAAACTGAAAAGATCAATGGGGATGATGATGATGATGATGGTGGCAATGATGGTAGAAGTGGACGTGGTGGTGGTGGGTTTGATAGTGATATTAACAACCCTTACAACACAAATAGCAGCAACAATGACATTCACAGAAATGAAGATGGATGTGTCGATGTTCATGTTTCTATTAATGGGTTGTCGTCTTAA 987 0.4742 MDLTSNNNQNLDADTQATPPTQPTNNNTSKSLSLTNGTHKRHPTTTAPPPQPPSMVVSYKECLKNHAASIGGHALDGCGEFMPPSSINHTDPRSLKCAACGCHRNFHRRDPQEHSKNPTFLSCFYSPSATAPPQPQPPLPSSPSPPPLSHLPPSYHTSAPHMLLALGTAFTAPSDEQHHRNLNSSSLVKPENPSGKKRYRTKFSKDQKEKMHSFSEKLGWRMQKGDDGLVQEFCNNIGVSKGVFKVWMHNNKNNFRKRSEDGNVPQTEKINGDDDDDDGGNDGRSGRGGGGFDSDINNPYNTNSSNNDIHRNEDGCVDVHVSINGLSS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4487g00001 328 MobiDBLite consensus disorder prediction 254 270 - -
Gabi4487g00001 328 MobiDBLite consensus disorder prediction 174 210 - -
Gabi4487g00001 328 SUPERFAMILY Homeodomain-like 189 257 IPR009057 -
Gabi4487g00001 328 MobiDBLite consensus disorder prediction 174 191 - -
Gabi4487g00001 328 MobiDBLite consensus disorder prediction 295 310 - -
Gabi4487g00001 328 MobiDBLite consensus disorder prediction 1 44 - -
Gabi4487g00001 328 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 110 IPR006456 -
Gabi4487g00001 328 MobiDBLite consensus disorder prediction 125 156 - -
Gabi4487g00001 328 MobiDBLite consensus disorder prediction 254 313 - -
Gabi4487g00001 328 MobiDBLite consensus disorder prediction 1 56 - -
Gabi4487g00001 328 FunFam Zinc-finger homeodomain protein 2 183 257 - -
Gabi4487g00001 328 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 26 254 - -
Gabi4487g00001 328 MobiDBLite consensus disorder prediction 193 210 - -
Gabi4487g00001 328 NCBIfam homeobox domain, ZF-HD class 196 253 IPR006455 -
Gabi4487g00001 328 Gene3D - 183 257 - -
Gabi4487g00001 328 MobiDBLite consensus disorder prediction 130 153 - -
Gabi4487g00001 328 Pfam ZF-HD protein dimerisation region 57 111 IPR006456 -
Gabi4487g00001 328 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 59 110 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4487g00001 Gabi-Chr4487 10910 12347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4487g00001 55 255 ZF-HD Transcription Factor Family AT1G69600 51.429 3.41e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gabi4487g00001 ZF-HD_dimer 1.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4487g00001 - - vum:124843063 394.815