Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4486g00007 ATGGCAACCATGACTTCCCCTCAGAACCAACCATATAAGCATTCTTCAGCAACTACAATCCGTTTCTTCAAGATTATTCTCACTTTGTTGCAGAAGATCCCAAACAATTTTACGAGGAGATATGGTGGTGGTCTGCCAAACCCAATGTTTCTCAAACCCCCGGATGGCATTGAATGGAAAGTATATTGGACTAAACATGATAGCCAAATTTTGCTTGAAAAGGGTTGGGAAGAATTTGCTAAATATTACTCCCTCGATCATGGGCATTTAGTAGTGTTTGAATATGAGAAAAATCCTACTCATATTGAGGTACACATATTTGACAAGAGTGCCCTTGAAATAGAATATCCTTTCCGTGACCATATCATTGATGATTCAGTTGAAATTCAGAAGAAAAGACTGAAATCACCAATGTCATCTTGTCCAACAAGTAAGAGATCTAGAACTGGCATAGCAAGAGAAGATGAAAGAAGCCCCAACCCGCAAAATTTTTTCCAGCATGTTCAAACTAAAGGTAGTCAATCTGAAGTAACAAACTTTGAGATGCCAATAATTGCATCTGTCAAGCAAGAGTTGGATGGTGGGAATGCAAGCAACAGAACTTCATTCTTGATTACTCCCCGCCCCGGGACAACCGGAGCTCTAGAAGAAGCTAAGAAGTTCACCTCAGAAAATCCCTTTTTCATAATCAATATAATGCAAAGTTATCTGACGAGAAGCAGACCAAGTATACCAAATGCCTTCGCCAGAAAGTATGTACAAAAGAACATGCAGAATCTGATGATACAGTTTGGGAAGAAGTTGTGGCCTGTAAAGTTGCTCCATTATCCAATGAAACGTGTTGTCTGTTTTGCCGTTGGTTGGCACCTTTTTGCTAAAGAAAGCAAATTGCAAGTTGGAGATATTTGTATCTTTGAACTCATTAATAGAGAAGAGTATGTGTTTGATGTTCATATTTTCAGAGGCCACATATAG 975 0.3897 MATMTSPQNQPYKHSSATTIRFFKIILTLLQKIPNNFTRRYGGGLPNPMFLKPPDGIEWKVYWTKHDSQILLEKGWEEFAKYYSLDHGHLVVFEYEKNPTHIEVHIFDKSALEIEYPFRDHIIDDSVEIQKKRLKSPMSSCPTSKRSRTGIAREDERSPNPQNFFQHVQTKGSQSEVTNFEMPIIASVKQELDGGNASNRTSFLITPRPGTTGALEEAKKFTSENPFFIINIMQSYLTRSRPSIPNAFARKYVQKNMQNLMIQFGKKLWPVKLLHYPMKRVVCFAVGWHLFAKESKLQVGDICIFELINREEYVFDVHIFRGHI 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4486g00007 324 SUPERFAMILY DNA-binding pseudobarrel domain 19 110 IPR015300 -
Gabi4486g00007 324 SUPERFAMILY DNA-binding pseudobarrel domain 221 321 IPR015300 -
Gabi4486g00007 324 CDD B3_DNA 33 108 IPR003340 GO:0003677
Gabi4486g00007 324 ProSiteProfiles B3 DNA-binding domain profile. 227 323 IPR003340 GO:0003677
Gabi4486g00007 324 ProSiteProfiles B3 DNA-binding domain profile. 33 110 IPR003340 GO:0003677
Gabi4486g00007 324 SMART B3_2 228 323 IPR003340 GO:0003677
Gabi4486g00007 324 SMART B3_2 22 110 IPR003340 GO:0003677
Gabi4486g00007 324 Gene3D - 210 323 IPR015300 -
Gabi4486g00007 324 Pfam B3 DNA binding domain 32 109 IPR003340 GO:0003677
Gabi4486g00007 324 Pfam B3 DNA binding domain 227 321 IPR003340 GO:0003677
Gabi4486g00007 324 PANTHER B3 DOMAIN-CONTAINING 219 321 - -
Gabi4486g00007 324 MobiDBLite consensus disorder prediction 134 163 - -
Gabi4486g00007 324 CDD B3_DNA 226 321 IPR003340 GO:0003677
Gabi4486g00007 324 Gene3D - 14 111 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4486g00007 Gabi-Chr4486 35702 38643 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4486g00007 32 321 B3 DNA Binding Superfamily AT3G18990 27.829 1.66e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi4486g00007 B3 2.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4486g00007 - - lang:109359485 297.745