Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4486g00005 ATGGTTTGCGGTAGCAACGGGGGAAATAAGCATCATCTTCCGACGGCAATCCTTTTCTTCAAGATTATTCTTAAAACAAGTCTTCAAGATGGAAAGCTTAAGATCCCAAAAAATTTCATTAGGAATTATGATGGTGACATGTCAAACCCAATGTTTCTCAAGCCTCCAGATGGCACTAAATGGGAAGTATTTTGGACCAAACATGATGGTGATATTTGGCTTCAAAGGGGTTGGAAAGAATTTGCTACATATTACTCCCTAGATCATGGGCATATGGTTTTGTTTGAATACAAGCAAACTTGTCATTTTGAGGTACACATATTTGACAAGAGTACCCTTGAAATACAATATCCTTTCCATGGCACTCAAGATGAACAGCCCAACCTCAACGAGGTTAGTGATGACTCAGTTGAAATTTCGAATGAGTTACTACCGTGCAATAAGACTAGACAGAAATCACCAATATCTTCTCCTCAACCACGTAAGAAATCTAGAACTGGCACAAGTAGAGATGTTAAGAGAAGATCCACTGAGCAAAACTTGCCTCAGCATATCCAAATCGAAGGCACAAACTTCGAGAATTCCAAATTTGGATCTGTAAAGAAAGAACCTGATGAGTATATGGGTGGTACCATTGAACAGGACAACCTTGACCAGATTCATGATAACTCAGTCAAAATTACGGATGAGCTACCACCATGCCATACGGCTAGACAGAAAGCACCGATATCTTGTCCTCAACCATGTAAAATATTAAGAACTGGCACTAGTGGAGATGTTGAAAGAAGATCCACTTTGCCAAAGTTGCCTCAGCATGTCCAAATTAAGGAGGAAATGGATGGTACCACTGAATGCCTAAAAGTGGAGCAGTCAACTTCTAAAAGTACTGAAGCTTTAAAGAAAACCACAACCATCAGATCTAAAAACCCCTCTTTCAGGATTGTCATGAAGCCTTCCTATGTTGTTCGACATCGCTTGGTGAGCTTTTGA 990 0.4 MVCGSNGGNKHHLPTAILFFKIILKTSLQDGKLKIPKNFIRNYDGDMSNPMFLKPPDGTKWEVFWTKHDGDIWLQRGWKEFATYYSLDHGHMVLFEYKQTCHFEVHIFDKSTLEIQYPFHGTQDEQPNLNEVSDDSVEISNELLPCNKTRQKSPISSPQPRKKSRTGTSRDVKRRSTEQNLPQHIQIEGTNFENSKFGSVKKEPDEYMGGTIEQDNLDQIHDNSVKITDELPPCHTARQKAPISCPQPCKILRTGTSGDVERRSTLPKLPQHVQIKEEMDGTTECLKVEQSTSKSTEALKKTTTIRSKNPSFRIVMKPSYVVRHRLVSF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4486g00005 329 MobiDBLite consensus disorder prediction 144 163 - -
Gabi4486g00005 329 SMART B3_2 19 111 IPR003340 GO:0003677
Gabi4486g00005 329 MobiDBLite consensus disorder prediction 164 178 - -
Gabi4486g00005 329 CDD B3_DNA 18 109 IPR003340 GO:0003677
Gabi4486g00005 329 Gene3D - 15 112 IPR015300 -
Gabi4486g00005 329 MobiDBLite consensus disorder prediction 179 197 - -
Gabi4486g00005 329 PANTHER B3 DOMAIN-CONTAINING 17 219 - -
Gabi4486g00005 329 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Gabi4486g00005 329 MobiDBLite consensus disorder prediction 144 209 - -
Gabi4486g00005 329 Pfam B3 DNA binding domain 20 110 IPR003340 GO:0003677
Gabi4486g00005 329 SUPERFAMILY DNA-binding pseudobarrel domain 17 111 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4486g00005 Gabi-Chr4486 19861 21339 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4486g00005 19 154 B3 DNA Binding Superfamily AT4G01580 30.882 2.95e-20 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi4486g00005 B3 1.4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4486g00005 - - lja:Lj0g3v0181669.1 243.047