Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4486g00004 ATGACACTGAATGGGAAGTATCTTGGAGGTTGGAAAGAATTTGCTACATATTACTCCCTAGATCATGGTCATATGGTGTTGTTTGAATACAAGCACACTTCTCATTTTGATGTACGCATATGTGACAAGAGTACCCTTGAAATAGATTATCCTTTCCATGGCACTCAAGATGCACAGGGCAACCTTGACCAGATTAGTGATGATGACTCAGTTAAAATTTCGGATGAGCTACCACCATTCCATAAGACTAGACAGAAATCACCAATTTCTTCTCCTCAACCATGTAAGAAATTGAGAACTTGCACAAGTGAAGCAGTTGAAGACGATATAGGTGATACTACAGAATTTCTAAGAGTGAAGCAGTTCACTTCTAAAACTACTGAAGCTATAAACAAAGCCCAAACTTTCAGATCTAGAAGTCCCTCTTTCACGATTGTCATGAAGCCTTCCTATGTTGATGGACATTTCTTGCATGTCCCATTACAATTTGCTGAAATATATTTGAAGAAAGAGGAAAGGAATATCCTCCTTCAAGTCTTGGATGGGAGAACTTGGACTTGTAAATATAGATTCCCCAACATTTTTGGTAGATGGAAGGAATTTGTATCAGATAATGATTTGAAAGTGGGAGATGTTTGTCTTTTTGAGATAACCAAGATCCGAGACCTTTCTTTGAAAGTACAAATCTTTCCACTTGCAGAAGAATCAAATTCCCCTCCAGTTCAAGAAACTGTTCAAGGAGATGGAATTCATTGGTTTGACCCTGGGAGAGTACTGCATGTTGGATGTTTGAATATTAATAGCAGAAAAGATAAGAAGACAACAAAAAGATCTTCATTGCTGACTGGAGCTCTGAAAGAAGCTAGTGAATTCGCCTCAGAAAATCCCTTTTTCAAAGTTAAAATAAGGGCGGATAATAAATTTAGACCGAATGTACCATTTGTCTTCATGAGAGATTACTACAATAACAACATGATGCAGATTGTGATGTTACAGTTTGGAAAGAAATTGTGGCCTGTAAAGTTAGTGAGGACTGCAAATAGAGATCGTGATCGATGGAAGTTGTCTAATGGTTGGTCCGTATTTGCTCGAGAAAGTAAATTGGTAGGTGGAGATTATTGTGTGTTTGAACTCATCAACATAGAAAATGCAGTACTTAATGTTCATATTTTTAGAGGCCACGGTTAG 1188 0.3754 MTLNGKYLGGWKEFATYYSLDHGHMVLFEYKHTSHFDVRICDKSTLEIDYPFHGTQDAQGNLDQISDDDSVKISDELPPFHKTRQKSPISSPQPCKKLRTCTSEAVEDDIGDTTEFLRVKQFTSKTTEAINKAQTFRSRSPSFTIVMKPSYVDGHFLHVPLQFAEIYLKKEERNILLQVLDGRTWTCKYRFPNIFGRWKEFVSDNDLKVGDVCLFEITKIRDLSLKVQIFPLAEESNSPPVQETVQGDGIHWFDPGRVLHVGCLNINSRKDKKTTKRSSLLTGALKEASEFASENPFFKVKIRADNKFRPNVPFVFMRDYYNNNMMQIVMLQFGKKLWPVKLVRTANRDRDRWKLSNGWSVFARESKLVGGDYCVFELINIENAVLNVHIFRGHG 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4486g00004 395 ProSiteProfiles B3 DNA-binding domain profile. 295 394 IPR003340 GO:0003677
Gabi4486g00004 395 SMART B3_2 143 233 IPR003340 GO:0003677
Gabi4486g00004 395 SMART B3_2 297 394 IPR003340 GO:0003677
Gabi4486g00004 395 SUPERFAMILY DNA-binding pseudobarrel domain 292 393 IPR015300 -
Gabi4486g00004 395 SUPERFAMILY DNA-binding pseudobarrel domain 138 229 IPR015300 -
Gabi4486g00004 395 Gene3D - 4 45 IPR015300 -
Gabi4486g00004 395 ProSiteProfiles B3 DNA-binding domain profile. 1 44 IPR003340 GO:0003677
Gabi4486g00004 395 MobiDBLite consensus disorder prediction 76 96 - -
Gabi4486g00004 395 Pfam B3 DNA binding domain 297 393 IPR003340 GO:0003677
Gabi4486g00004 395 Pfam B3 DNA binding domain 143 230 IPR003340 GO:0003677
Gabi4486g00004 395 SUPERFAMILY DNA-binding pseudobarrel domain 8 51 IPR015300 -
Gabi4486g00004 395 CDD B3_DNA 296 392 IPR003340 GO:0003677
Gabi4486g00004 395 CDD B3_DNA 141 231 IPR003340 GO:0003677
Gabi4486g00004 395 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 285 393 IPR044837 -
Gabi4486g00004 395 Gene3D - 122 234 IPR015300 -
Gabi4486g00004 395 Gene3D - 281 394 IPR015300 -
Gabi4486g00004 395 ProSiteProfiles B3 DNA-binding domain profile. 142 233 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4486g00004 Gabi-Chr4486 15042 17093 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4486g00004 284 392 B3 DNA Binding Superfamily AT3G18990 33.333 1.27e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi4486g00004 B3 1.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4486g00004 - - lja:Lj5g3v0508090.1 377.096