Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4485g00001 ATGGCTTCTTCTTCTTCTTCTCATGTTGCTGGTTCTTCCAAGACTGTTTTAGCAACATCACAAAGCAGAGAAGCAAATGCTTTGTTGAAGTGGAAAGCAAGCCTTGACAACCAAAGCCAGGTTTCACTATCTTCGTGGACAGGGAATAGTCCATGCAATTGGCTCGGAATTGTGTGTGACGTGTCCACATCTGTCTCCAACATAAGGCTTGCAAATATGGGACTAAGAGGTACGCTTCAATGTCTCAACTTCTCATCACTTCCAAACATCCTCAATCTAAATATAAGTGGTAACTCCTTGAATGGAAGTGTTCCTCCCCAAATTGGGGTGTTGTCCAAACTCTCCCATCTTGATCTCAGTCACAATCATCTCTCTGGAACAATTCCATCTGAAATAACACACTTGCCTGCTCTTCTTACTTTATATTTGTCTAATAATATTTTCAGTGGTTCCATTCCTCAAGATATTGGTGCATTGTTGAATCTCAGAGAGCTTAGTCTTGAATTTACTAATCTCACAGGGACTATCCCAGTTTCTATAGGGAAGCTAGCCTTCTTGTCTTATCTTTCTCTTTGGAATTGCAACCTCACAGGGTCTATCCCAATTTCTATAGGAAACTTGGCCAACTTGTCCAATCTTGATTTAACTCGGAACAAATTTTCTGGCTATATTCCTCAGGAAATTGGGAAACTGTCATACCTGAAGTATTTGTGGCTTGGACATAATGACTTTTATGGTTCTATCCCTAAAGAAATTGGCAAGTTGAGGAACCTAGAGAAACTACATCTTCAGGACAACTATTTTTCTGGGCACATTCCTGCGGAAATTGGGGAGTTGGTCAACTTGAAGGAATTATTCTTTTACGAGAATGAAATTTCTGGCTCCATTCCTATGGAAATTGGGAAATTGGTAAACATGAATCAACTGCATGTCCGTAGCAATCATCTTTCTGGTTCCATTCCTCAAGAAATTGGAATGTTGACAGCTATGTTTAGTCTTGATTTATCCAATAACTATCTCTCTGGACCAATTCCTTCTACAATTGGAAATTTGACAAAGGTTAGTTACTTAGCTCTATACTCAAATGAACTCAGTGGCAACATTCCAATAGAAATGAACAAGCTAACCAATTTGGAAAGTGTGCAGCTATCTGATAATCATTTCATTGGTAGTTTGCCTCACAACATTTGCATTAGTGGAAAGTTGGAATTCTTTGCTGCTTCCAATAACCATTTCACAGGTCCAGTTCCAAAGAGCTTGAAGAATTGCACCAGCCTCATAAGACTTAGGCTTGAACAAAACCAACTGAGTGGAAATATAGCAGATGCTTTTGGTGTGTATCCAAATCTGATATACATGGGATTGAGTGAAAATAATTTTTATGGCCATCTTTCACCTAACTGGGGAAAGTGCCATAACCTCGCAACCCTCATGATCTCCAACAATGATTTGTCAGGTGCTATACCATCAGAACTAGGTGAGGCAACCAACTTAGGTATACTTGACTTATCTTCAAACCATCTTGCAGGAAAATTTCCGAAAGAACTAGGCAACTTGACTTCATTGATCAAACTCTTGATGAGCAACAATCGTCTTTCAGGAAATGTTCCCATACAAATAGCATCATTGCAAGAACTTGATACCTTGGATCTTGCAACAAATAATTTGAATGGCTTCATCATAGAACAACTGGGAAGGTTGCCTAAGTTATTGAACTTGAATTTGAGCCAAAATAAATTCAAGGGAAATATTCCTGTTGAGTTTGCCAAATTAAAAGTTCTTCAAAGCTTTGATCTTAGTGGGAATTCTTTGGGTGGAACAATACCACCAGTGCTTGGACAGCTGAAATACTTAGAAACATTGAATCTCTCACGTAATAATCTTTTTGGTGCCATTCCCTCCAGCTTTGATCAGATGTTAAGCTTGACATCCATTGATATATCATACAACCAATTAGAGGGTCCACTTCCAAGCATTTTAGCTTTCCAAAAAGCTCCAATTGAAGCATTGAGAAATAACAAAGGCTTGTGTGGTAATGTCTCTGGCCTAGAGCCTTGCCGAAGTAGCAAATCTCATAATCATAAAACTATCAAAGTCATATTGGTAGTTTTACCCCTTTTGGGCACTGTAGTACTAGTACTATTTGCTTTTGGTGTCTCATATTGTCTTTGCCGACCTTCAAGCACAGAAGAAAACCAAGCTGCAGAATCACAAGCTCAAAATCTATTTGCAGTATGGGGTTTTGATGGCAAAATAGTGTATGAGAACATTATTGAAGCCACGGAAGAGTTTGACAACAGCCATCTAATTGGGGTTGGAGGGCAGGGATGTGTTTACAAAGCAGAGTTGCCCACAGGTCAAGTTGTAGCTGTGAAGAAACTCCATTCAATACCAAATGGAGAAATGTCCAATCTAAAAGCTTTCACAAGTGAGATCCAAGCTTTGACAGAAATTCGACATCGTAACATTGTGAAATTATATGGCTTTTGTTCACACTCACGATTCTCATTTCTGGTTTATGAGCTATTGGAGAAGGGAAGTGTGGAGAATATTTTGAAAGATGATGAACAAGCAATTGCATTTGACTGGAATAAGAGGGTCAATGTGGTTAAAGGTGTAGCTGATGCTTTATGCTATATGCACCATGATTGCTCACCTCCATTTGTTCATCGTGATATATCAAGCAAGAATGTTCTTCTTGATTTGCAATATGTGGCTCATTTGTCAGACTTTGGAACAGCTAAGCTTCTTAATCCTAACTCAAACCACTGGACCTCGTTTGCAGGAACCTTCGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTTAATGAGAAAAGTGATGTGTTTAGTTTTGGGGTATTAGCATTGGAAATTCTTTTTGGAAAGCACCCAGGAGATGTTATATCTTCTTCTTTGCTATCATCATCTTCATGGAGTGTCATGGCCTCCACACTTAATGCTATACCATTGATGGATAAGTTGGACCAGCGTCTCCCTCATCCTATAAATCCTGTTGTTAAGGAGGTGGAATCAATTGGAAGGATAGCAATTGCCTGTTTGACTGAAACCTCACGTTCTCGCCCTACCATGGAGCAGATTGTCAAGGAACTTGTAATGCCGAAGTCATCTTCAATGGATTAA 3147 0.3931 MASSSSSHVAGSSKTVLATSQSREANALLKWKASLDNQSQVSLSSWTGNSPCNWLGIVCDVSTSVSNIRLANMGLRGTLQCLNFSSLPNILNLNISGNSLNGSVPPQIGVLSKLSHLDLSHNHLSGTIPSEITHLPALLTLYLSNNIFSGSIPQDIGALLNLRELSLEFTNLTGTIPVSIGKLAFLSYLSLWNCNLTGSIPISIGNLANLSNLDLTRNKFSGYIPQEIGKLSYLKYLWLGHNDFYGSIPKEIGKLRNLEKLHLQDNYFSGHIPAEIGELVNLKELFFYENEISGSIPMEIGKLVNMNQLHVRSNHLSGSIPQEIGMLTAMFSLDLSNNYLSGPIPSTIGNLTKVSYLALYSNELSGNIPIEMNKLTNLESVQLSDNHFIGSLPHNICISGKLEFFAASNNHFTGPVPKSLKNCTSLIRLRLEQNQLSGNIADAFGVYPNLIYMGLSENNFYGHLSPNWGKCHNLATLMISNNDLSGAIPSELGEATNLGILDLSSNHLAGKFPKELGNLTSLIKLLMSNNRLSGNVPIQIASLQELDTLDLATNNLNGFIIEQLGRLPKLLNLNLSQNKFKGNIPVEFAKLKVLQSFDLSGNSLGGTIPPVLGQLKYLETLNLSRNNLFGAIPSSFDQMLSLTSIDISYNQLEGPLPSILAFQKAPIEALRNNKGLCGNVSGLEPCRSSKSHNHKTIKVILVVLPLLGTVVLVLFAFGVSYCLCRPSSTEENQAAESQAQNLFAVWGFDGKIVYENIIEATEEFDNSHLIGVGGQGCVYKAELPTGQVVAVKKLHSIPNGEMSNLKAFTSEIQALTEIRHRNIVKLYGFCSHSRFSFLVYELLEKGSVENILKDDEQAIAFDWNKRVNVVKGVADALCYMHHDCSPPFVHRDISSKNVLLDLQYVAHLSDFGTAKLLNPNSNHWTSFAGTFGYAAPELAYTMEVNEKSDVFSFGVLALEILFGKHPGDVISSSLLSSSSWSVMASTLNAIPLMDKLDQRLPHPINPVVKEVESIGRIAIACLTETSRSRPTMEQIVKELVMPKSSSMD 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4485g00001 1048 Pfam Protein kinase domain 766 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4485g00001 1048 SUPERFAMILY L domain-like 421 678 - -
Gabi4485g00001 1048 FunFam Uncharacterized protein 397 695 - -
Gabi4485g00001 1048 PANTHER LEUCINE RICH REPEAT KINASE 2 330 1044 - -
Gabi4485g00001 1048 FunFam MDIS1-interacting receptor like kinase 2 843 1045 - -
Gabi4485g00001 1048 Coils Coil 1047 1048 - -
Gabi4485g00001 1048 FunFam Leucine-rich receptor-like protein kinase family protein 178 274 - -
Gabi4485g00001 1048 ProSitePatterns Tyrosine protein kinases specific active-site signature. 888 900 IPR008266 GO:0004672|GO:0006468
Gabi4485g00001 1048 Gene3D Phosphorylase Kinase; domain 1 725 842 - -
Gabi4485g00001 1048 FunFam MDIS1-interacting receptor like kinase 2 isoform A 295 396 - -
Gabi4485g00001 1048 PRINTS Leucine-rich repeat signature 114 127 - -
Gabi4485g00001 1048 PRINTS Leucine-rich repeat signature 615 628 - -
Gabi4485g00001 1048 Pfam Leucine rich repeat 545 604 IPR001611 GO:0005515
Gabi4485g00001 1048 Gene3D Ribonuclease Inhibitor 175 271 IPR032675 -
Gabi4485g00001 1048 Pfam Leucine Rich Repeat 618 637 IPR001611 GO:0005515
Gabi4485g00001 1048 Pfam Leucine Rich Repeat 113 135 IPR001611 GO:0005515
Gabi4485g00001 1048 FunFam Nuclear pore complex protein NUP107 21 177 - -
Gabi4485g00001 1048 ProSiteProfiles Leucine-rich repeat profile. 113 135 IPR001611 GO:0005515
Gabi4485g00001 1048 Gene3D Ribonuclease Inhibitor 372 695 IPR032675 -
Gabi4485g00001 1048 Pfam Leucine rich repeat N-terminal domain 23 60 IPR013210 -
Gabi4485g00001 1048 SUPERFAMILY Protein kinase-like (PK-like) 750 1039 IPR011009 -
Gabi4485g00001 1048 SUPERFAMILY RNI-like 67 389 - -
Gabi4485g00001 1048 Gene3D Transferase(Phosphotransferase) domain 1 843 1047 - -
Gabi4485g00001 1048 FunFam Leucine-rich repeat receptor protein kinase MSP1 727 842 - -
Gabi4485g00001 1048 ProSiteProfiles Protein kinase domain profile. 764 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4485g00001 1048 Gene3D Ribonuclease Inhibitor 272 371 IPR032675 -
Gabi4485g00001 1048 Gene3D Ribonuclease Inhibitor 22 174 IPR032675 -
Gabi4485g00001 1048 SMART LRR_typ_2 591 615 IPR003591 -
Gabi4485g00001 1048 SMART LRR_typ_2 111 134 IPR003591 -
Gabi4485g00001 1048 SMART LRR_typ_2 135 159 IPR003591 -
Gabi4485g00001 1048 SMART LRR_typ_2 375 399 IPR003591 -
Gabi4485g00001 1048 SMART LRR_typ_2 207 231 IPR003591 -
Gabi4485g00001 1048 SMART LRR_typ_2 255 279 IPR003591 -
Gabi4485g00001 1048 SMART LRR_typ_2 327 351 IPR003591 -
Gabi4485g00001 1048 SMART LRR_typ_2 567 590 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4485g00001 Gabi-Chr4485 43999 47364 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4485g00001 7 936 Receptor kinase-like Gene Family AT4G08850 44.762 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi4485g00001 Pkinase 7.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4485g00001 - - gmx:100811066 1326.61