Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00090 ATGGCATTTCCTTTGGAAATTCTTTTGTTCTTTCTTATTGCATTGCCAATTTCTGATGTGCATGCAGACATCATTATCTCCCCAATTTTGAAGAGGTCACAAGAAGGAAACTCCGGAACATTTGGAGGAGCTTGTGGGTATCAAGATGTGGTTAAAGAAGGTTATGGGCTTGACACAACAGCATTGAGCACAGCTTTGTTCAACAATGGCCGGACATGTGGGGCATGTTTCCAGATCAAATGTGTAAACTCTCAATGGTGTAAAGGCCAATCCTCTATTTATGTCACAGCCACCGACCTTTGCCCTCCAAATTATAGTATACCAAGTGACAATGGAGGATGGTGCAACCCACCACGCAAGCACTTTGACTTAGCCATCCCTGCATATCTCAAATTTGCAGAATACAGGGGTGGCATTGTGCCAGTCATATATCGCAGGGTACCATGCAAGAGGGAGGGAGGTATTAGGTTCACCATGAATGGGAATCCTTATTTCAATCTAATAAAAGTGTGGAATGTTGGAGGAGCTGGGGAAATAGTAAGAGTGCAAGTGATGAAGGATGATGGCAAGTTCAAATGGACAGATTTGAGGCGAAATTGGGGTCAGAATTGGGATACAGATGTTAGGTTAGTGGGAGAGAGATTGAGCTTCAGGGTGACAGCAAGTGATGGAAGGTCCAGTGTCTCAAGGCGTGTCGCCCCTAAGTATTGGCAGTTTGGTCAGACCTAA 729 0.4458 MAFPLEILLFFLIALPISDVHADIIISPILKRSQEGNSGTFGGACGYQDVVKEGYGLDTTALSTALFNNGRTCGACFQIKCVNSQWCKGQSSIYVTATDLCPPNYSIPSDNGGWCNPPRKHFDLAIPAYLKFAEYRGGIVPVIYRRVPCKREGGIRFTMNGNPYFNLIKVWNVGGAGEIVRVQVMKDDGKFKWTDLRRNWGQNWDTDVRLVGERLSFRVTASDGRSSVSRRVAPKYWQFGQT 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00090 242 PRINTS Expansin signature 153 165 IPR002963 GO:0009664
Gabi4483g00090 242 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Gabi4483g00090 242 PRINTS Expansin signature 54 68 IPR002963 GO:0009664
Gabi4483g00090 242 PRINTS Expansin signature 93 103 IPR002963 GO:0009664
Gabi4483g00090 242 PRINTS Expansin signature 129 142 IPR002963 GO:0009664
Gabi4483g00090 242 PRINTS Expansin signature 231 242 IPR002963 GO:0009664
Gabi4483g00090 242 PRINTS Expansin signature 165 186 IPR002963 GO:0009664
Gabi4483g00090 242 PRINTS Expansin signature 112 129 IPR002963 GO:0009664
Gabi4483g00090 242 SMART dpbb_1 59 144 IPR007112 -
Gabi4483g00090 242 Gene3D - 31 150 IPR036908 -
Gabi4483g00090 242 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Gabi4483g00090 242 PRINTS Expansin/Lol pI family signature 231 242 IPR007118 GO:0005576
Gabi4483g00090 242 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576
Gabi4483g00090 242 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Gabi4483g00090 242 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Gabi4483g00090 242 CDD DPBB_EXPA_N 38 149 - -
Gabi4483g00090 242 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 154 IPR007112 -
Gabi4483g00090 242 PANTHER EXPANSIN-A15 35 242 IPR002963 GO:0009664
Gabi4483g00090 242 Gene3D - 154 242 IPR036749 -
Gabi4483g00090 242 Pfam Expansin C-terminal domain 155 234 IPR007117 -
Gabi4483g00090 242 Pfam Lytic transglycolase 59 144 IPR009009 -
Gabi4483g00090 242 SUPERFAMILY Barwin-like endoglucanases 38 172 IPR036908 -
Gabi4483g00090 242 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 242 IPR007117 -
Gabi4483g00090 242 SUPERFAMILY PHL pollen allergen 151 242 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00090 Gabi-Chr4483 867472 869027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00090 1 242 Expansin Gene Family AT2G39700 54.582 7.64e-95 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00090 - - gmx:100800424 335.109