Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00085 ATGCAGGTTCAAGAGGAACATGACCATGTGGTGTGCAACGATGATCAAATGCAAATCATCATCAAAGGCAAGCGCACGAAGCGTCAAAGGCTACCATCACCTCTTAGGCTAGCAATGTCAACAACATCAAGAAGCAGCACTACTGACAATTCAGGAGGATCATATGATGTTGCTACAACCTCAACCACTGTTTCAATTGATGAATTCAGGAACAGAACCGAAGAATTAGAGGATCACGACATGGCCAATTGTTTGATTCTCTTGGCTCAAGGCTATCATAATAACAACAACCAGCATGTGGCTGCACCTGATCACAACAATAACAACAATAAGAAGAAGATCACAGGGCTATACCCTTACCAGTGCAAGACTTGTAACCGATGCTTCCCTTCATTCCAAGCGCTTGGTGGCCACAGAACCAGCCACAAGAAACCTAATAAGGCAAATAGTAGTACTACAGAAGAAAAGCAAGGAAAAGTTACTACTTTTGTTAATGAGTTAGCAGCGAATGATCATCATAATTATGATCCCACAAGCACCAACCTCACCTTACAATTATCTAATAGGGATTTGTATAGAAGCAGCATTGCTACAACAACTACTCCTAAATCTAAAGTTCATGAGTGTTCCATATGTGGAGCTGAGTTCACATCAGGTCAAGCCTTGGGGGGTCATATGAGACGGCATAGAACTTCTGCAACATTATCTATGAGTGGTGGAAACCCCGGAAAACAAGAAGCCAAGAAACCCAGAAATGTTTTGAAGCTGGACTTGAATCTTCCAGCACCTGAGGATGATCACAGAGAACCCAAGTTTCCTTTTCAGTCCAAAGAAAAAGTTATTGTATTCTCTGCAACTTCTTTGGTGGATTGTCATTACTAA 882 0.4172 MQVQEEHDHVVCNDDQMQIIIKGKRTKRQRLPSPLRLAMSTTSRSSTTDNSGGSYDVATTSTTVSIDEFRNRTEELEDHDMANCLILLAQGYHNNNNQHVAAPDHNNNNNKKKITGLYPYQCKTCNRCFPSFQALGGHRTSHKKPNKANSSTTEEKQGKVTTFVNELAANDHHNYDPTSTNLTLQLSNRDLYRSSIATTTTPKSKVHECSICGAEFTSGQALGGHMRRHRTSATLSMSGGNPGKQEAKKPRNVLKLDLNLPAPEDDHREPKFPFQSKEKVIVFSATSLVDCHY 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00085 293 ProSitePatterns Zinc finger C2H2 type domain signature. 209 229 IPR013087 -
Gabi4483g00085 293 MobiDBLite consensus disorder prediction 37 56 - -
Gabi4483g00085 293 Pfam C2H2-type zinc finger 120 145 - -
Gabi4483g00085 293 Pfam C2H2-type zinc finger 206 231 - -
Gabi4483g00085 293 MobiDBLite consensus disorder prediction 136 158 - -
Gabi4483g00085 293 Gene3D Classic Zinc Finger 95 177 - -
Gabi4483g00085 293 Gene3D Classic Zinc Finger 187 258 - -
Gabi4483g00085 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 207 234 IPR013087 -
Gabi4483g00085 293 PANTHER ZINC FINGER PROTEIN ZAT5 38 277 - -
Gabi4483g00085 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
Gabi4483g00085 293 SMART c2h2final6 207 229 IPR013087 -
Gabi4483g00085 293 SMART c2h2final6 120 142 IPR013087 -
Gabi4483g00085 293 SUPERFAMILY beta-beta-alpha zinc fingers 119 229 IPR036236 -
Gabi4483g00085 293 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00085 Gabi-Chr4483 818467 819348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00085 3 293 C2H2 Transcription Factor Family AT5G03510 41.214 1.51e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4483g00085 zf-C2H2_6 1.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00085 - - ccaj:109798139 299.286