Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00083 ATGCCGATTCGAAACATCGCCATCGGAAGGCCCGAAGAGGCCACTCACCCAGACACCTTGAAGGCTGCGTTGTCTGAATTCATCTCCACCCTCATCTTCGTCTTCGCCGGCTCAGGTTCCAGCATCGCCTTCAACAAGCTCACCAGTGACGGCGCTACCACCCCCGCCGGCCTCATCTCCGCTGCTATTGCCCATGCATTCGCCCTCTTCGTCGCCGTCTCCGTCGGCGCCAACATCTCCGGCGGTCACGTCAATCCCGCCGTCACCTTCGGTGCCTTCGTCGGCGGCAACATCACCTTCCTCCGCGCCATCGTCTACATCATCGCCCAGCTACTCGGCTCCATCGTCGCCTCCTTGCTCCTCGCTTTCGTAACCGGACTCGTAAGACCTGTTCCAGCATTCGGTCTCACTGCTGGAGTCGGAGTTGGGAACGCGTTGGTGTTCGAGATCGTGATGACTTTCGGGTTGGTGTACACTGTGTACGCTACAGCAATTGATCCCAAGAAGGGTAATTTGGGAATTATAGCCCCCATCGCCATCGGTTTCATTGTTGGTGCTAATATTTTGGCCGGTGGAGCCTTCACCGGAGCATCCATGAACCCAGCCGTGACATTCGGACCTGCCGTCGTGAGCTGGAGCTGGGGCAACTACTGGATTTACTGGGTTGGGCCTCTCGTCGGTGGTGGTCTTGCTGGACTTATCTACGAAGTGATCTTCATTGGCCAAACCCACGAGCAGCTTCCCACCGCCGATTACTAG 759 0.5744 MPIRNIAIGRPEEATHPDTLKAALSEFISTLIFVFAGSGSSIAFNKLTSDGATTPAGLISAAIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITFLRAIVYIIAQLLGSIVASLLLAFVTGLVRPVPAFGLTAGVGVGNALVFEIVMTFGLVYTVYATAIDPKKGNLGIIAPIAIGFIVGANILAGGAFTGASMNPAVTFGPAVVSWSWGNYWIYWVGPLVGGGLAGLIYEVIFIGQTHEQLPTADY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00083 252 PANTHER AQUAPORIN-8 6 247 IPR034294 -
Gabi4483g00083 252 SUPERFAMILY Aquaporin-like 12 246 IPR023271 -
Gabi4483g00083 252 FunFam Probable aquaporin TIP1-1 4 252 - -
Gabi4483g00083 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Gabi4483g00083 252 Pfam Major intrinsic protein 14 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00083 252 NCBIfam MIP family channel protein 25 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00083 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00083 252 PRINTS Major intrinsic protein family signature 181 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00083 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00083 252 PRINTS Major intrinsic protein family signature 218 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00083 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00083 252 PRINTS Major intrinsic protein family signature 148 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00083 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Gabi4483g00083 252 CDD MIP 21 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00083 Gabi-Chr4483 793522 794768 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00083 1 252 Major Intrinsic Protein MIP AT2G36830 81.746 3.16e-144 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00083 K09873 - gmx:100527509 432.95