Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00080 ATGGATACCAAAATGGAACCCCAGTTGTCAAGTAATGGAGTTTCTCATCACTACCACGTTGATGGGTCTCCATCGGAACTCGGATATGGACATTACGGGTGCTCACACTATAAAAGGAGATGCAAGATCATAGCGCCCTGTTGCAATGAAACTTTCCATTGCAGACATTGCCATAACGAATCTAAGAATTCGATTGAAGTTGATCCTGTTGACCGGCATGATATTCCTCGACATGATGTGAAGAGAGTCATCTGCTGCTTGTGTAACACTGAGCAAGATGTTCAACAGATGTGCATTCACTGTGGTGTTTGCATGGGGAGATACTTCTGCTCCAAATGCAAGTTTTTCGATGACGATGTATCAAAAAATCAATACCATTGTGATGAATGTGGTATCTGCAGAATTGGAGGTCAAGAGAACTTTTTCCACTGTAACAAATGTGGATGTTGTTATTCGTCAATGTTGAAGGATTCACACCACTGTATTGAAAAAGCAATGCATCACAATTGCCCAGTTTGCTTTGAGTTTCTTTTTGATACAACGAAAGACATTACTGTATTGCCATGTGGTCACACCATACATTTGGGATGTGTGAAAGAAATGGAACAGCATTTCCAATATTCATGCCCTGTTTGTTCAAAGTCCTTTTGTGATATGTCACGTGTGTGGGAGAAACTGGATGAGGAGGTTGCATCAACGCCTATGCCTGAAATGTATCAAAATAAGATGGTTTGGATTCTTTGCAATGACTGCGGAGAAACATCTGAAGTAAGTTTTCATATTGTGGCGCACAAGTGCCTTAAATGCAAATCCTACAACACGAGAAAGACGCAAGCTGCCTCTGCTTCATGCTCATCGAGGATTGAAGAGATGGTTAGATGA 882 0.4127 MDTKMEPQLSSNGVSHHYHVDGSPSELGYGHYGCSHYKRRCKIIAPCCNETFHCRHCHNESKNSIEVDPVDRHDIPRHDVKRVICCLCNTEQDVQQMCIHCGVCMGRYFCSKCKFFDDDVSKNQYHCDECGICRIGGQENFFHCNKCGCCYSSMLKDSHHCIEKAMHHNCPVCFEFLFDTTKDITVLPCGHTIHLGCVKEMEQHFQYSCPVCSKSFCDMSRVWEKLDEEVASTPMPEMYQNKMVWILCNDCGETSEVSFHIVAHKCLKCKSYNTRKTQAASASCSSRIEEMVR 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00080 293 SUPERFAMILY Zinc hairpin stack 106 163 IPR037275 -
Gabi4483g00080 293 SMART ring_2 170 212 IPR001841 -
Gabi4483g00080 293 ProSiteProfiles Zinc finger RING-type profile. 170 213 IPR001841 -
Gabi4483g00080 293 ProSiteProfiles Zinc finger CHY-type profile. 27 103 IPR008913 GO:0008270
Gabi4483g00080 293 Gene3D - 241 285 - -
Gabi4483g00080 293 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 29 281 - -
Gabi4483g00080 293 ProSiteProfiles Zinc finger CTCHY-type profile. 105 169 IPR017921 -
Gabi4483g00080 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 215 IPR013083 -
Gabi4483g00080 293 SUPERFAMILY CHY zinc finger-like 30 105 IPR037274 GO:0008270
Gabi4483g00080 293 Pfam CHY zinc finger 34 115 IPR008913 GO:0008270
Gabi4483g00080 293 Pfam Ring finger domain 169 212 IPR001841 -
Gabi4483g00080 293 SUPERFAMILY RING/U-box 168 218 - -
Gabi4483g00080 293 Pfam Zinc-ribbon 217 275 IPR039512 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00080 Gabi-Chr4483 774449 777793 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00080 32 286 C2H2 Transcription Factor Family AT3G18290 40.304 3.69e-53 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00080 K10144 - qsa:O6P43_006606 550.821