Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00078 ATGCTCCAAACAACCTGCATTTTATTAATCTTTGTTCTGTGTTCGTTTTCGCCGTTTGGAACAGCAATGCTGAACCTAACTCTTCCCGGTCAACATCCTGACCCTGAAGCTGTTGCTCACGAAGTTCATAGGAAGGTTAATGCTTCAATTGCAAGAAGGGAAATGCTAGCAATTTCACTGAAAGATGAGTCGTCGTGCCTAACAGGGAACCCCATCGACGATTGTTGGAAATGCGACCCAGATTGGCCCAACAATCGCCAGAGGCTAGCTGATTGTGCCATTGGGTTCGGTCAATATGCAAAAGGAGGGAAAGGTGGTGAGTTTTACATAGTGACAGACTCATCAGATAATGATGCTGTGAACCCAAAACCAGGAACGCTGAGATACGCAGTGATACAGAATGAGCCACTGTGGATAGTGTTCCCAAGTAACATGATGATTAAGCTTTCTCAGGAACTGATATTTAACAGCTACAAGACACTTGATGGGCGAGGTGCTGATGTGCACATTGTTGGAGGAGGGTGCATCACTTTGCAGTATATAAGCAACATCATCATACACAACATTCACGTCCATCATTGTCATCCCTCAGGAAACACAAACGTGAGGTCGAGTCCAGAGCACTACGGGTATCGTACGTTATCAGACGGAGACGGAATATCCTTATTCGGAGCGAAGGACATATGGATAGACCACTGCACGCTTTCACGGTGCAAGGACGGACTCATAGACGCCATTATGGGGTCCACTGGGATAACAATATCCAACAACTTCATGTCACACCACAACGAGGTCATGCTTCTTGGACACAGCGATGACTATCTACCAGACTCAGGTATGCAAGTCACCATCGCCTTCAACCACTTCGGTGAGAAGCTCGTTCAGAGGATGCCACGTTGCAGGAGGGGTTACATTCACGTCGTCAACAACGACTTCACACAGTGGGAGATGTACGCCATTGGTGGAAGCGGTGAACCCACCATTAACAGCCAGGGGAACCGTTACACCGCACCGACCAACACTTTCGCTAAGGAAGTCACTAAGAGGGTTGATACCGATCAAGGCAAGTGGAAGGGTTGGAATTGGAGATCAGAGGGTGACATCATGGTCAATGGTGCTTTCTTCGTTGCTTCGGGTGAAGGTGTTGAGGTTAAGTACGAGAAGGCCTACAGCGTTGAACCTAAATCCGCCGACCGCATTGCTCTCCTCACCATGTCCGCCGGCGTTCTCGGTGTTGCCAGGGACAACAACCTCGGAATGTGGAGCAGAGGATCCGACGGTGGAGGTGATGGTATTTTAGAGTCCGGTCCGGAGTACACCGACGATATGTCCACGACTGCAAGGTCAGTTGACTTCCTCAATGATCAAATTACTCAAATCTTGCAACTTCCACCTAGAGCCGATAAAACGAGCTCGACTTGGCGGGTCAACCAGCCCAACCCGCCAAATGGAGCGGAACGGACTGAGTTTTTCAACTCATCTCAAAAGCAGAGCGGGACAGACTCATTTTTTGACGAGTTGATAACGGATATACATAGGCCGAGACGGGTCAGTGTAAAATAG 1563 0.4869 MLQTTCILLIFVLCSFSPFGTAMLNLTLPGQHPDPEAVAHEVHRKVNASIARREMLAISLKDESSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGKGGEFYIVTDSSDNDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTLDGRGADVHIVGGGCITLQYISNIIIHNIHVHHCHPSGNTNVRSSPEHYGYRTLSDGDGISLFGAKDIWIDHCTLSRCKDGLIDAIMGSTGITISNNFMSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGEPTINSQGNRYTAPTNTFAKEVTKRVDTDQGKWKGWNWRSEGDIMVNGAFFVASGEGVEVKYEKAYSVEPKSADRIALLTMSAGVLGVARDNNLGMWSRGSDGGGDGILESGPEYTDDMSTTARSVDFLNDQITQILQLPPRADKTSSTWRVNQPNPPNGAERTEFFNSSQKQSGTDSFFDELITDIHRPRRVSVK 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00078 520 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Gabi4483g00078 520 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Gabi4483g00078 520 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Gabi4483g00078 520 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Gabi4483g00078 520 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Gabi4483g00078 520 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Gabi4483g00078 520 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Gabi4483g00078 520 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Gabi4483g00078 520 PANTHER PECTATE LYASE 18-RELATED 30 413 IPR045032 GO:0030570
Gabi4483g00078 520 SUPERFAMILY Pectin lyase-like 65 399 IPR011050 -
Gabi4483g00078 520 MobiDBLite consensus disorder prediction 466 504 - -
Gabi4483g00078 520 FunFam Pectate lyase 69 411 - -
Gabi4483g00078 520 Gene3D - 69 411 IPR012334 -
Gabi4483g00078 520 Pfam Pectate lyase 154 329 IPR002022 -
Gabi4483g00078 520 MobiDBLite consensus disorder prediction 466 507 - -
Gabi4483g00078 520 SMART amb_all 144 341 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00078 Gabi-Chr4483 752032 756087 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00078 1 444 Polysaccharide Lyase AT3G53190 78.125 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00078 K01728 - gmx:100775595 818.535