Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00068 ATGGCGACTCGGTTTGAATTCTTCGACGAGAACGAAGTTGCAGCGGCACATGTCATTGGAGGTGGAGCAGAATATGGATTCACCGAAGATGAAGAAGACGAAGATGAAGAAGACGAAGATGAAGGCGACGAAGATTATGTACCCGCTGTGCCGTCACCTGGGGCTTCGCATAACGGTCCTCGTAGTCCTACCTCCGACGAAGTAATTGTTATCCCCGACGAAACACAGTACAAACGCCGTAGAACCGAAGGAGGAGATACTTCCTGTTCGTCTGAGTGGAATCGCACCGACACTGATGGCCTCATTTGCCCTATTTGCATGGATGTTTGGAACAATAACGGCGAACATCACATCTGTTGTCTTCCTTGTGGACACATATATGGTATGTCTTGTATCAAAAAATGGCTTCAACAGCGGAATAAGTGTCCTCAATGTAATAGGAACTGTTGCTTAAAGGATGTGAGGAAACTCTATGCTTCCCGAGTAGTTGCTGGCGATGAAGAATCTAAGAAGAGAATTCGGTCACTTGAGGCCAAATGTGATGCCCTTGAAAGAACGGGTGGTGATTGGCTCAAGAAAGAAGCTGGATGGCAAGAGAGAGAAGCTGCATTGCATCTTGAAGTTCAGAAGCTTACAAAGAGAAACACTTATTTGGAGCAGCTGCTACTAGATATGCAGAACAGGCCATCTGGGTTGATAAATAGCAGTGGAAACTCTCAATGGAGATGTGAATCTGAGCACAATTTTGGCTCACAGTCCCATGGAATAGGATCGTTTTGCAATTTTGAAATGCAGAAAGCGTTTCATTTGGATGGTGCACGTGTATTTGATATGGACCCTTCTAATCAAATTTTATTAATTGCTCAAAAGCCGAAGGGGATAGGTGGAATGCACTTGCTAACTAAAATGAGCTTGATATCTCCATTTGAGATGGAAGATATCTTACTGCCTTCCACTACAAATGGTATTAGAGACCTACATATTTCTCCTAATAGTAGCCTGGCCCTTTATGCATCATTAGAGAAGAAATTATCAGTACTCAGCATGGGCAGCAGCAACCTTGTTGTCAGTTATGATCTACAGGTTCCTGCTTGGTCTTGTTCATGGGATCTTAACAGTTCGCATTACATATATGCTGGGCTACAGAATGGTTCTGTCTTGGTCTTTGATATGCGCCAAACTGCAGGACCTATGAAATCTATGGTTGGGTCGACTGGCAACCCTGTTCATACTGTACAATCTCTTGCACAAACTTCAGGTCTTTCTTCTGGTGTTAGAACCATCCTATCTGCATCTGCCGCTGGCCTTTGTCAGTGGAACATTGATTCTGAAGAACGGCCATATGTGGTTCCTGAAACTGATAATCAAGGAGTTTGTATATCCCTTGCCTATTGCCCAAGCAGTGATGACATTGTTGTTTCATACCGTCCAAAATTTGACATGTCGATGGATGTGCCTCTTTCTCAACCATCGCCCAGTCCTTATGTTGATGGACAAGGAGTACTGGGCTCTCATGTCTTGTTCAAGAGAATGGGCAGTCATTTTTTCCAAAAGATGGGTTCCTCATATGCCAATGTAAGTAAAGTTCGACTACCAAAATGTGTAATTATGGACATGGAGAATCAGAGCAGATTATTTGCTTCTGGAGATGAAGATACATGTGATTTGGTCTTGCGTGAGTTGCCATCTTTTAGAGTTCTTCAGCAATTCAAAATACCAGCTCAGGCCCGTGATGTTAGGTACTCACCTAGCCATGGAATACTTGGTTGTTTAACCGAGAATACATTGCAGCTTTTCTATACTTAA 1806 0.4336 MATRFEFFDENEVAAAHVIGGGAEYGFTEDEEDEDEEDEDEGDEDYVPAVPSPGASHNGPRSPTSDEVIVIPDETQYKRRRTEGGDTSCSSEWNRTDTDGLICPICMDVWNNNGEHHICCLPCGHIYGMSCIKKWLQQRNKCPQCNRNCCLKDVRKLYASRVVAGDEESKKRIRSLEAKCDALERTGGDWLKKEAGWQEREAALHLEVQKLTKRNTYLEQLLLDMQNRPSGLINSSGNSQWRCESEHNFGSQSHGIGSFCNFEMQKAFHLDGARVFDMDPSNQILLIAQKPKGIGGMHLLTKMSLISPFEMEDILLPSTTNGIRDLHISPNSSLALYASLEKKLSVLSMGSSNLVVSYDLQVPAWSCSWDLNSSHYIYAGLQNGSVLVFDMRQTAGPMKSMVGSTGNPVHTVQSLAQTSGLSSGVRTILSASAAGLCQWNIDSEERPYVVPETDNQGVCISLAYCPSSDDIVVSYRPKFDMSMDVPLSQPSPSPYVDGQGVLGSHVLFKRMGSHFFQKMGSSYANVSKVRLPKCVIMDMENQSRLFASGDEDTCDLVLRELPSFRVLQQFKIPAQARDVRYSPSHGILGCLTENTLQLFYT 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00068 601 Coils Coil 166 186 - -
Gabi4483g00068 601 CDD mRING-C3HGC3_RFWD3 99 158 - -
Gabi4483g00068 601 PANTHER RFWD3 PROTEIN 24 599 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Gabi4483g00068 601 Gene3D - 269 494 IPR015943 GO:0005515
Gabi4483g00068 601 SUPERFAMILY RING/U-box 93 152 - -
Gabi4483g00068 601 ProSiteProfiles Zinc finger RING-type profile. 103 146 IPR001841 -
Gabi4483g00068 601 SMART ring_2 103 145 IPR001841 -
Gabi4483g00068 601 Pfam Ring finger domain 103 146 IPR001841 -
Gabi4483g00068 601 SUPERFAMILY WD40 repeat-like 318 598 IPR036322 GO:0005515
Gabi4483g00068 601 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 204 IPR013083 -
Gabi4483g00068 601 MobiDBLite consensus disorder prediction 19 91 - -
Gabi4483g00068 601 MobiDBLite consensus disorder prediction 26 46 - -
Gabi4483g00068 601 MobiDBLite consensus disorder prediction 72 86 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00068 103 148 C3H Transcription Factor Family AT1G51930 40.426 6.30e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00068 K15691 - gmx:100818898 785.023