Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00061 ATGTCACAAGATTCTGAGGAGATAAAGACGATTGAGCAGTGGAAATGGTCTGAAATGCAAGGCCTTGAGCTCGTGTGTGATGATGATGCTAATGCTACTCCCACTTCCACTTCCACTTCCACTTCCACTTCTCACCCATATAAACCCAATCCACCAACGTTAACAGGGTACTCTGAGGCAACAAAGGCAGAGGAAGGTGCTAGTGCTACTCAACAAGGAGTTTCAAGGGTAATGGAAACCTCTGAACCCAACAAAGATGGTGTTGGTGTTGGTGTTGGAAAGAAAGGTGAGAGTGTTCCCTCTGTGGGGTTTGGGGACCTTTTTAGATTTGCTGATGGGTTGGATTACATTCTCATGGCAATTGGAACGGTTGGAGCAATAGTACACGGTTGTTCTTTGCCTATCTTTCTTCGGTTCTTCGCGGATCTTGTAAATTCTTTTGGGTCCAATGCTAATAACGTGGACAAGATGACTCAGGAAGTGGTGAAGTATGCGTTTTACTTCTTGGTGGTTGGTGCTGCTATATGGGCATCCTCATGGGCAGAGATTTCGTGTTGGATGTGGAGCGGAGAGCGTCAATCAACGAAGATGAGGATCAAGTACCTGGAAGCTGCGTTGAATCAGGACATTGAGTTCTTTGATACCGAGGTTCGAACATCCGATGTTGTTTTTGCAATCAACACTGATGCTGTTATGGTTCAGGACGCCATTAGTGAGAAGTTGGGGAATTTCATTCACTACATGGCCACGTTTGTTTCTGGTTTTGTTGTGGGTTTCACTGCTGTTTGGCAATTGGCTCTGGTCACTCTCGCTGTAGTTCCTATGATAGCTGTGATCGGAGCCATTCACACCACCACGTTGGCCAAACTCTCCGGCAAAAGCCAGGAAGCTCTTTCTCAAGCTGGCAACATTGTAGAACAGACGGTTGTGCAAATCCGAGTAGTGCTAGCCTTCGTTGGGGAGTCTCGAGCATTGCAAGCTTACTCATCAGCTTTGAAGGTTTCTCAGAAGATTGGCTATAAAACTGGGTTTGCAAAGGGAATGGGATTGGGTGCCACTTACTTTGTTGTTTTCTGCTGTTATGCGCTTCTGCTGTGGTATGGAGGCTATCTGGTTAGGCATCATTCCACAAATGGAGGACTTGCCATTGCAACCATGTTTGCTGTTATGATCGGTGGATTGGGTTTAGGCCAGTCTGCACCCAGCATGGTTGCATTTACTAAGGCCAGGGTTGCTGCTGCAAAAATTTTCCGTATAATTGATCACAAACCCGGTATAGACAGAAACAGTGAATCTGGGTTGGAACTTGATACAGTTACTGGACTTGTGGAGCTGAAAAATGTGGACTTTTCTTACCCATCCAGGCCTGAGGTTCGGATCCTCAATGATTTCTCCTTGAATGTGCCTGCTGGCAAGACCATAGCTTTGGTGGGTAGCAGTGGCTCTGGAAAGAGCACTGTTGTCTCCCTCGTTGAGAGATTCTATGACCCAACTTCAGGACAAGTTCTGCTAGATGGTCATGACATTAAAACTTTGAAGCTTAAATGGCTGAGACAGCAGATAGGATTGGTGAGCCAAGAGCCTGCTTTATTTGCTACCACAATTAGAGAAAATATACTTTTGGGTAGGCCTGATGCAGACCAGGTTGAGATTGAAGAAGCTGCCAGGGTTGCTAATGCACATTCCTTCATCATCAAACTTCCTGATGGCTATGAAACCCAGGTGGGAGAAAGAGGATTGCAACTTTCTGGAGGACAAAAGCAGAGAATAGCAATTGCAAGGGCAATGCTGAAAAACCCAGCAATTCTTCTCTTAGATGAGGCAACAAGTGCATTGGACTCTGAATCAGAAAAGCTGGTGCAAGAAGCCCTTGACCGGTTCATGATTGGCAGAACAACTCTTGTAATTGCCCATCGCCTCTCCACTATTCGCAAAGCTGACCTCGTAGCTGTGCTTCAGCAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAGCTCTTTTCTAAAGGGGAAAATGGAGTCTATGCCAAGCTTATAAGGATGCAGGAGATGGCACATGAAACTGCTATGAGTAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCAAGAAACTCTGTGAGCTCACCCATAATTGCTCGGAATTCTTCTTATGGCCGGTCACCATACTCGCGGAGGCTGTCTGATTTCTCTACATCTGATTTTAGTCTGTCCCTTGATGCATCACATCCAAATTACAGGCTTGAAAAGATAGCCTTCAAAGAGCAAGCCAGTTCCTTCTGGCGACTTGCAAAAATGAACTCTCCTGAATGGCTTTATGCTTTAATTGGCTCTATAGGTTCAGTTGTTTGTGGATCCCTTAGTGCCTTCTTTGCTTATGTTCTTAGTGCTGTCCTCAGTGTCTATTACAATCCAAACCACAGACACATGATCCGAGAAATAGACAAATATTGCTACTTGTTGATTGGGCTTTCATCAACTGCACTTCTTTTCAATACGTTGCAACACTTCTTCTGGGATATTGTTGGTGAAAATCTTACAAAACGAGTGAGGGAGAAAATGCTGACGGCAGTGCTCAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGCGCTAGGATTGCTGCAAGGCTTTCTCTTGATGCCAACAATGTTAGATCAGCCATTGGAGATCGAATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCTTGCACTGCAGGGTTTGTGTTGCAATGGCGTCTTGCCCTTGTCCTCATAGCTGTCTTCCCTGTTGTTGTAGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACCTGGAAGCTGCTCATGCTAAGGCCACACAACTAGCAGGTGAAGCTATAGCCAATGTAAGGACTGTTGCAGCCTTCAATTCAGAAACAAAAATTGTTGGCCTTTTCTCCTCCAACCTTGAAACTCCACTACAAAGGTGCTTTTGGAAGGGACAAATTTCTGGAAGTGGATATGGGATAGCTCAGTTTGCACTTTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTTGTGAAGCATGGTATCTCTGATTTCTCTAAAACAATCCGAGTTTTTATGGTCCTCATGGTATCTGCCAATGGTGCTGCTGAAACTTTAACACTGGCTCCTGATTTCATCAAGGGAGGTCGAGCCATGAGGTCAGTCTTTGATCTCCTCGACCGTAGAACTGAAATTGAACCTGATGACCAAGATGCTACTCCTGTTCCTGATCGTCTTCGCGGTGAAGTTGAACTCAAGCATGTAGATTTCTCTTATCCCACACGCCCAGATATGCCAGTTTTTCGTGACCTTAGTCTTCGTGCCAAGGCTGGTAAAACTCTTGCACTTGTTGGACCTAGTGGTTGTGGTAAGAGCTCAGTCATTGCACTTATACAGAGATTCTATGATCCTACATCTGGTAGGGTCATGATTGATGGAAAAGATATCAGAAAATACAACCTCAAGTCCTTAAGAAGGCATATTTCTGTGGTACCTCAAGAGCCTTGCCTGTTTGCTACTACTATTTATGAAAACATTGCTTATGGACATGACTCAGCTACTGAGGCTGAGATAATTGAAGCTGCAACTCTTGCCAATGCTCACAAGTTCATATCTGCTTTGCCTGATGGATACAAAACATTTGTTGGGGAGAGAGGTGTTCAACTGTCCGGGGGACAAAAGCAAAGAATAGCAGTTGCTAGGGCCTTTGTGAGGAAGGCAGAACTCATGCTTCTTGATGAGGCCACAAGTGCACTTGATGCTGAATCTGAGAGGTCTGTTCAAGAGGCTTTAGACCGTGCCTCCTCAGGAAAAACAACTATTATTGTTGCACATAGACTTTCAACAATCAGGAATGCGAATCTCATTGCTGTTATTGATGATGGGAAAGTAGCTGAGCAAGGTTCACATTCACAGTTGTTGAAAAATCACCCTGATGGGATTTATGCACGCATGATTCAATTACAAAGGTTCACACACAACCAAGTCATTGGGATGGCCTCTGGTTCAAGTTCTTCAACAAGACCAAAAGATGATGAAAAATAA 4089 0.4458 MSQDSEEIKTIEQWKWSEMQGLELVCDDDANATPTSTSTSTSTSHPYKPNPPTLTGYSEATKAEEGASATQQGVSRVMETSEPNKDGVGVGVGKKGESVPSVGFGDLFRFADGLDYILMAIGTVGAIVHGCSLPIFLRFFADLVNSFGSNANNVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWSGERQSTKMRIKYLEAALNQDIEFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSGKSQEALSQAGNIVEQTVVQIRVVLAFVGESRALQAYSSALKVSQKIGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHSTNGGLAIATMFAVMIGGLGLGQSAPSMVAFTKARVAAAKIFRIIDHKPGIDRNSESGLELDTVTGLVELKNVDFSYPSRPEVRILNDFSLNVPAGKTIALVGSSGSGKSTVVSLVERFYDPTSGQVLLDGHDIKTLKLKWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEEAARVANAHSFIIKLPDGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIRMQEMAHETAMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPNYRLEKIAFKEQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAFFAYVLSAVLSVYYNPNHRHMIREIDKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLSLDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSETKIVGLFSSNLETPLQRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDQDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLSLRAKAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHDSATEAEIIEAATLANAHKFISALPDGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDAESERSVQEALDRASSGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFTHNQVIGMASGSSSSTRPKDDEK 1362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00061 1362 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 775 1062 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi4483g00061 1362 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 120 408 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi4483g00061 1362 CDD ABC_MTABC3_MDL1_MDL2 443 682 - -
Gabi4483g00061 1362 Gene3D ABC transporter type 1, transmembrane domain 1064 1340 IPR036640 GO:0005524|GO:0016020
Gabi4483g00061 1362 SUPERFAMILY ABC transporter transmembrane region 107 427 IPR036640 GO:0005524|GO:0016020
Gabi4483g00061 1362 MobiDBLite consensus disorder prediction 64 79 - -
Gabi4483g00061 1362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 434 682 IPR027417 -
Gabi4483g00061 1362 SUPERFAMILY ABC transporter transmembrane region 762 1082 IPR036640 GO:0005524|GO:0016020
Gabi4483g00061 1362 Gene3D ABC transporter type 1, transmembrane domain 754 1063 IPR036640 GO:0005524|GO:0016020
Gabi4483g00061 1362 MobiDBLite consensus disorder prediction 25 92 - -
Gabi4483g00061 1362 FunFam ABC transporter B family member 1 754 1063 - -
Gabi4483g00061 1362 Pfam ABC transporter 1117 1265 IPR003439 GO:0005524
Gabi4483g00061 1362 ProSitePatterns ABC transporters family signature. 1237 1251 IPR017871 GO:0005524|GO:0016887
Gabi4483g00061 1362 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 443 679 IPR003439 GO:0005524
Gabi4483g00061 1362 CDD ABC_MTABC3_MDL1_MDL2 1098 1337 - -
Gabi4483g00061 1362 PANTHER ABC TRANSPORTER B FAMILY 91 829 IPR039421 -
Gabi4483g00061 1362 MobiDBLite consensus disorder prediction 30 57 - -
Gabi4483g00061 1362 FunFam ABC transporter B family member 1 106 441 - -
Gabi4483g00061 1362 SMART AAA_5 1125 1317 IPR003593 GO:0016887
Gabi4483g00061 1362 SMART AAA_5 470 656 IPR003593 GO:0016887
Gabi4483g00061 1362 ProSitePatterns ABC transporters family signature. 582 596 IPR017871 GO:0005524|GO:0016887
Gabi4483g00061 1362 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1098 1334 IPR003439 GO:0005524
Gabi4483g00061 1362 CDD ABC_6TM_Pgp_ABCB1_D1_like 119 416 - -
Gabi4483g00061 1362 Pfam ABC transporter transmembrane region 119 393 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi4483g00061 1362 Pfam ABC transporter transmembrane region 776 1045 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi4483g00061 1362 Gene3D - 433 683 IPR027417 -
Gabi4483g00061 1362 Gene3D - 1087 1338 IPR027417 -
Gabi4483g00061 1362 FunFam ABC transporter B family member 19 1064 1086 - -
Gabi4483g00061 1362 Gene3D ABC transporter type 1, transmembrane domain 107 696 IPR036640 GO:0005524|GO:0016020
Gabi4483g00061 1362 FunFam ABC transporter B family member 1 1088 1338 - -
Gabi4483g00061 1362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1089 1337 IPR027417 -
Gabi4483g00061 1362 CDD ABC_6TM_Pgp_ABCB1_D2_like 764 1080 - -
Gabi4483g00061 1362 Pfam ABC transporter 461 610 IPR003439 GO:0005524
Gabi4483g00061 1362 FunFam ABC transporter B family member 1 433 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00061 Gabi-Chr4483 534395 540386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00061 94 1359 Calmodulin-binding Proteins AT2G36910 89.108 0.0 2321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00061 K05658 - gmx:100814667 2395.54