Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00046 ATGCTGCCTCTTTGTGCCGCCCGGATATTCCAACTCACCAGGGAACTAGGCCACCGCTCCGACGGAGAGACCATCGAGTGGCTCCTGCGCCAGGCCGAGCCCTCCATCATCGCCGCCACCGGCTCCGGCACAGTCCCCGCTGCGCCAGTCTCCACTAGCACCGCCGCATTGGACTTCTCCTCCGGCCAAGAGGGGATGTTCGCCATGGCCCTGGCACAGCCGCCGGGAATGGAGTACCGGAACATGCCGTTCACGGCCGTTGTTGTTGCAACCGACGTCAATGGAAGATACAGAGCAAGATGA 303 0.6304 MLPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGSGTVPAAPVSTSTAALDFSSGQEGMFAMALAQPPGMEYRNMPFTAVVVATDVNGRYRAR 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00046 100 Pfam TCP family transcription factor 4 56 IPR017887 -
Gabi4483g00046 100 ProSiteProfiles TCP domain profile. 1 39 IPR017887 -
Gabi4483g00046 100 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 4 62 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00046 Gabi-Chr4483 387098 387400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00046 4 61 TCP Transcription Factor Family AT5G08330 77.586 2.06e-24 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gabi4483g00046 TCP 1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00046 - - vun:114191143 120.553