Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00043 ATGATATTGATACGGTTATTTGATGCCATCCAATCAGCTGCAATGAAGTGTTTTTCATTCCACCATGTAGAGAAGAAAGATGAACCGAAAGGCTTGCAATCAGTTTCGGTTCGGTCAGACAGTTCCACATATGCTGAGGTTAGAAGATCTGGTTCTGAATTGAATTCTCTGGATGCTTCAGACAATGGCAGCACTGAATCCCTCAGGAGGAATGCAATTCCCAGTTTGTCCCAAAGACCTAGCAACCTTAGAGTGTTCACTGTGTCTGAATTGAAATCAGCCACAAAGAATTTTAGTCGCTCTGTTATGATTGGAGAGGGTGGATTTGGATGTGTCTACCAGGGATTGATTAGAAGTGTAGAGGACCCATCCAGAAGAATTGAAGTTGCAGTTAAACAGCTTAGTAAAAGAGGAATGCAGGGACATAGGGAATGGGTGACGGAAGTGAATGTTTTGGGCATTGTCGAGCATCCCAATCTTGTGAAATTAGTGGGCTACTGTGCTGATGATGATGAAAGAGGAATCCAGCGGCTTCTGATTTATGAATACATGCCAAACAGAAGCGTGGAGCACCATTTATCGCACCGAGCAGAGACTCCTCTCCCATGGAGTAGGAGATTAAAAATAGCCCAAGATGCAGCTCGTGGATTAACATACCTGCATGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTTTTGGACGAACAGTGGAAAGCAAAGCTATCAGACTTTGGGTTAGCCAGATTGGGACCATCGGATGGATTAACTCATGTCTCAACAGCGGTTGTAGGAACAATGGGATATGCAGCTCCTGAATATATTCAAACTGGACGTCTCACATCAAAGAATGATGTATGGAGCTATGGTGTCTTCCTTTATGAACTCATTACTGGCAGGCGCCCTTTAGATCGAAATCGCCCCAAGGGTGAGCAGAAGCTGTTGGAATGGATAAAGCCATACCTATCAGATGGCAAGAAATTTGAACTAATATTGGATCCAAGACTTGATAAGAAACAAGTCATCAAGTCAGCCCAGAAACTTGCTATAATAGCTAACCGATGCTTGGTCAAAAACCCAAAGAGTCGGCCAAAGATGAGCGAGGTATTGGAAATGGTGAATGGAATAGTAGAACCTTCATCAAGTGCTAGTCCAAAGTTACCCTTGAAGAATGTGACAAGAGTGGAAGCTTCTCAAGACACTGAAATAAAAAACAAGAAACGGACCATGGATTTGAAGCCTGGAGAAAGTAATTGGTTTGTTAGGATGTGGAGACCAAAACTTTTAAGAGCATCTTGA 1317 0.4229 MILIRLFDAIQSAAMKCFSFHHVEKKDEPKGLQSVSVRSDSSTYAEVRRSGSELNSLDASDNGSTESLRRNAIPSLSQRPSNLRVFTVSELKSATKNFSRSVMIGEGGFGCVYQGLIRSVEDPSRRIEVAVKQLSKRGMQGHREWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNRSVEHHLSHRAETPLPWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWKAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYIQTGRLTSKNDVWSYGVFLYELITGRRPLDRNRPKGEQKLLEWIKPYLSDGKKFELILDPRLDKKQVIKSAQKLAIIANRCLVKNPKSRPKMSEVLEMVNGIVEPSSSASPKLPLKNVTRVEASQDTEIKNKKRTMDLKPGESNWFVRMWRPKLLRAS 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00043 438 CDD STKc_IRAK 104 382 - -
Gabi4483g00043 438 PANTHER OS01G0588500 PROTEIN-RELATED 60 380 - -
Gabi4483g00043 438 ProSiteProfiles Protein kinase domain profile. 98 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4483g00043 438 FunFam Serine/threonine-protein kinase PCRK2 184 393 - -
Gabi4483g00043 438 Gene3D Transferase(Phosphotransferase) domain 1 184 400 - -
Gabi4483g00043 438 Gene3D Phosphorylase Kinase; domain 1 71 183 - -
Gabi4483g00043 438 MobiDBLite consensus disorder prediction 43 73 - -
Gabi4483g00043 438 ProSitePatterns Protein kinases ATP-binding region signature. 104 132 IPR017441 GO:0005524
Gabi4483g00043 438 Pfam Protein tyrosine and serine/threonine kinase 103 377 IPR001245 GO:0004672|GO:0006468
Gabi4483g00043 438 FunFam Serine/threonine-protein kinase BIK1 65 183 - -
Gabi4483g00043 438 SUPERFAMILY Protein kinase-like (PK-like) 75 379 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00043 Gabi-Chr4483 365971 370374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00043 15 394 Glycoside Hydrolase AT3G07070 40.769 2.83e-91 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi4483g00043 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00043 - - gsj:114400704 767.303