LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4483g00042	ATGAATGAAATGAGGAACAATGCCTCATGGTTCTCCCTTGTCTTATTCTTGTCCACTTTTGTTTTAATAAGTCTGCTACCACGAGTTCAATGTGCAGAAGGGGGTGATACTCTTGCACCATCATTTTACACGGAAGAAATCTACAAGGAACTTGAAGGTCTTACTACGGCTTTAACCAAGGATATCAAGGAAGATTTAAACTTCTGCATAAAGGATGTGGAGAAAGACTGGGAGGAAGCCTTTGATTTTAAGGGAAAGTTGGATTTTGTAGATGCTTGTGTTAAGCAAAAAGGTGATTTCAGAGATCGAATGTGTACCACAGCTGAAATAAGGTACTACTTCAACAGTTTCTTCGAACAGGGGGGCTCATCTGCCAGTTATGTAAAACCTAACAAGAATTGCAATTTGACTTCATGGGTTTCTGGTTGTGAACCTGGTTGGAGTTGTAGTGCTGGCCAGAAAATTGACCTGAAAAAGGATACAAAGGATATTCCTGATAGAATTAATAACTGTCAACCTTGCTGTGAGGGGTTTTTCTGCCCTCAGGGATTGACTTGCATGATAACTTGCCCACTTGGTTCTTATTGTCCACTTGCAAAACTGAACCAAACAACTGGAGTATGTGACCCATACAGTTACCAGTTACCTCCAGGAGAAGCAAATCATACTTGTGGTAGTGCTGATATTTGGTCTAGTGTTGTGAACAATAGTGATATCTTCTGTTCTCCAGGATCATACTGCCCTTCTACCACGCGCAAAGTTTCTTGTGATAGAGGATATTACTGCAGGATGGGTACAACTCATCAAAATCCATGCTCTTCGTTGAGTTCCTGTGATCCAAACACAGCAACGCAAAATATGCAAGCTTACGCCGCTTTGCTTATTGTTGCTTTGAGTACTGTCCTGATCTTCATATATAACTGTTCTGATCAAGTTCTAGCTACTAGAGAAAAAAGGAAGGCTATGTCAAGGGAAGCTGCAGTAAAACATGCAAGAGAAACAACACAAGCTCGTGAAAGGTGGAAAATAGCAAAAGATGTCGCTAAGAAGGGTACAACGGGATTGCAACGCCAGTTGTCTCGCACCTTTTCTCGTAAAAAATCTGTAAGGCAAGGAGAGCAATTGCCTACAAGCAAAGCTGATCTTTCATCTGATGGTTCAAATGCCACAAAGAAGGAACCTAGCAACCTCACTAAAATGTTGAACTCCCTTGAGGATGATCCTAACAACAATGAAGGATTTGACCTGAAAATTGGAGATAAAAATATTAAAAAGAAGATGCCAAAGGGAAAACAGTTACAAACTCATAGCCAAATTTTAAGGTATGCTTATGGTCAGATTGAGAAGGAGAAAGCTCAGCAAGAGCAAAACAAGAACTTGACTTTCTCAGGAGTAATTTCAATGGCTACTGATGGTGAGGTGAGGACAAGGCCTGTGATTGAGGTTGCATTCAATGATCTAACTCTCACTTTGAAAGGGAAAAACAAACATCTACTGAGATGTGTGACCGGTAAAATCATGCCTGGTCGAGTTTCAGCTGTCATGGGTCCCTCGGGAGCTGGGAAAACAACATTTCTTTCAGCTTTGGCAGGAAAAGCAAGAGGATGCACTATGTCAGGCTCAATTCTAATTAATGGAAAACCTGAATCTATTCACTCCTACAAGAAAATTACTGGTTTTGTGCCACAAGATGATATTGTGCATGGAAACTTGACAGTTGAGGAAAATCTTCGTTTCAGTGCAAGATGCAGACTGCCTGCGGCCATGCCAAAACCAGATAAGGTTCTAATTGTTGAAAGAGTAATTGAGTCCTTGGGACTCCAACCAGTGAGGGATTCTCTAGTTGGAACGGTAGAGAGGAGGGGCATATCTGGAGGGCAAAGAAAACGTGTTAATGTAGGGGTGGAGATGGTGATGGAGCCTTCGTTATTAATCTTAGATGAGCCTACAACTGGTTTGGACAGTGCATCTTCCAGTTTACTGCTCAAAGCGCTTCGACGTGAAGCCCTTGAAGGGGTAAACATATGCATGGTACTTCACCAACCAAGCTATACTTTGTTCAGAATGTTTGATGATATAATATTTCTGGCCAAAGGTGGCCTTACTGCATATCATGGTCCTGTTAAAAAAGTAGAAGAATACTTTGCTGGCATTGGAATCCCTGTACCAGATCGTGTGAATCCTCCAGATCATTTCATTGACATTCTAGAAGGTTTAGTGAAACCAAGTTCAGGTGTAACTCATGAACAACTTCCTGTCAGATGGATGCTTCATAATGGATACGCAGTACCACTGGATATGCTTCATTATGCTGCTGAAATTTCTGCATCTTCATCTGACTCAAAAGCAGCTGAAGCAACAAAGGGTACTGAGGAAGCTGCTGAAAAATCCTTTGTTGGAGAGTTTTGGGAGGATTTGAAGAGTAATATTCAGACTCAACGAGATCGCATAGAGGCAATCTTCTCAAGAACGAAGGACTTATCTAACAGGACAACTCCTGATGTAACCCGGCAATATAGATACTTTGTTGGCCGGATTGGCAAGCAGCAGCTGCGAGAAGCAAAATTACAAGCAGTCGACTATCTCCTTTTATTGGTTGCTGGTGCTATCTTAGGAATTCTTACTAAAGTGAATGATGAAACATTTGGGTCCCTTGGCTATACATATACTGTCATAGCTGTCTCTCTACTTTGCAAGATTGCAGCTCTGAGATCATTTTCTCTAGATAAATTACAATACTGGAGGGAGAGTGCAGCTGGGATGAGCAGTCTGGCACATTTTCTGTCCAAAGATACAATTGATCTTTTCAATACAATCATCAAACCATTGGTTTATCTGTCCATGTTCTATTTTTTTAGCAATCCAAGGTCAAGCTTTGCAAGTAATTATATAGTTTTGCTTTGTCTTGTGTACTGCGTGACTGGCATGGCTTATGCATTAGCCATTTTCTTTGAGCCTGGTCCTGCACAGCTGTGGTCAGTGCTTCTTCCAGTCGTTATGACTCTCATTGCCAACCAGAACAGAGATACTGCATTTATGAAGACTCTTGTACAATTTTGCTATCCAAAATGGGCTTTGGAGGCCTTTGTCATTGCAAATGCTGAAAGGTACACTGGAGTGTGGCTGATAACTCGTTGTGGTTCGCTTATGAGCAGTGGCTATAATCTCAGCGAATGGCCTATTTGTCTAGTTGCCCTCATTTTGTATGGTATAGTGGCCCGATTTGTGGCCTTCTTTTGTCTGGTGATTTCCCAAAATAAATGA	3264	0.4145	MNEMRNNASWFSLVLFLSTFVLISLLPRVQCAEGGDTLAPSFYTEEIYKELEGLTTALTKDIKEDLNFCIKDVEKDWEEAFDFKGKLDFVDACVKQKGDFRDRMCTTAEIRYYFNSFFEQGGSSASYVKPNKNCNLTSWVSGCEPGWSCSAGQKIDLKKDTKDIPDRINNCQPCCEGFFCPQGLTCMITCPLGSYCPLAKLNQTTGVCDPYSYQLPPGEANHTCGSADIWSSVVNNSDIFCSPGSYCPSTTRKVSCDRGYYCRMGTTHQNPCSSLSSCDPNTATQNMQAYAALLIVALSTVLIFIYNCSDQVLATREKRKAMSREAAVKHARETTQARERWKIAKDVAKKGTTGLQRQLSRTFSRKKSVRQGEQLPTSKADLSSDGSNATKKEPSNLTKMLNSLEDDPNNNEGFDLKIGDKNIKKKMPKGKQLQTHSQILRYAYGQIEKEKAQQEQNKNLTFSGVISMATDGEVRTRPVIEVAFNDLTLTLKGKNKHLLRCVTGKIMPGRVSAVMGPSGAGKTTFLSALAGKARGCTMSGSILINGKPESIHSYKKITGFVPQDDIVHGNLTVEENLRFSARCRLPAAMPKPDKVLIVERVIESLGLQPVRDSLVGTVERRGISGGQRKRVNVGVEMVMEPSLLILDEPTTGLDSASSSLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIIFLAKGGLTAYHGPVKKVEEYFAGIGIPVPDRVNPPDHFIDILEGLVKPSSGVTHEQLPVRWMLHNGYAVPLDMLHYAAEISASSSDSKAAEATKGTEEAAEKSFVGEFWEDLKSNIQTQRDRIEAIFSRTKDLSNRTTPDVTRQYRYFVGRIGKQQLREAKLQAVDYLLLLVAGAILGILTKVNDETFGSLGYTYTVIAVSLLCKIAALRSFSLDKLQYWRESAAGMSSLAHFLSKDTIDLFNTIIKPLVYLSMFYFFSNPRSSFASNYIVLLCLVYCVTGMAYALAIFFEPGPAQLWSVLLPVVMTLIANQNRDTAFMKTLVQFCYPKWALEAFVIANAERYTGVWLITRCGSLMSSGYNLSEWPICLVALILYGIVARFVAFFCLVISQNK	1087

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4483g00042	1087	ProSitePatterns	ABC transporters family signature.	623	637	IPR017871	GO:0005524\|GO:0016887
	Gabi4483g00042	1087	FunFam	ABC transporter G family member 24	476	718	-	-
	Gabi4483g00042	1087	MobiDBLite	consensus disorder prediction	352	395	-	-
	Gabi4483g00042	1087	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	483	707	IPR027417	-
	Gabi4483g00042	1087	MobiDBLite	consensus disorder prediction	369	395	-	-
	Gabi4483g00042	1087	Pfam	ABC-2 type transporter	680	1086	IPR043926	GO:0140359
	Gabi4483g00042	1087	Gene3D	-	473	717	IPR027417	-
	Gabi4483g00042	1087	SMART	AAA_5	508	700	IPR003593	GO:0016887
	Gabi4483g00042	1087	CDD	ABCG_EPDR	480	706	-	-
	Gabi4483g00042	1087	Pfam	ABC transporter	502	650	IPR003439	GO:0005524
	Gabi4483g00042	1087	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	482	723	IPR003439	GO:0005524
	Gabi4483g00042	1087	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 28	421	1074	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4483g00042	Gabi-Chr4483	349614	357732	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4483g00042	509	702	Calmodulin-binding Proteins	AT2G36910	28.218	3.91e-09	59.3