Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00034 ATGGAACCAACCACCCTCACCACCAGTGGCCAACACCTCTGCTTGACTGAAGCCACCGACCCACTCAATTGGGATGTGACCGCTGAGTCACTCAAGGGGAGCCACCTCGACGAGGTGAAGCGCATGGTGGCCGAGTACCGGAAGCCGGTGATCCGGCTGGGAGGCCAGACACTCACGATCTCACAGGTGGCTGCAATCGCCGCCGACGACCAACGCGTACGGGTGGAGCTGTCGGAGTTGGCCAGAGCTGGAGTTAAGGCCAGCAGTGAGTGGGTGATTGATAGCATGAAAAACAGCACTGACAGCAATGGCGTCACCACAGGGTTCGGTGCCACCTCACACCGCCGAACTAAACAAGGTGGTGCTTTGCAGAACGAGCTCATCAGGTTTTTGAACGCTGGAATATTTGGCAATGGAACAGAGTCATGCCACACACTGCCACACTCTGCAACAAGAGCAGCCATGCTAGTGAGAATAAACACACTTCTCCAAGGGTACTCAGGCATTAGATTTGAAATTTTAGAAGCCATCACCAAGTTCCTCAACAACAACGTTACCCCATGTTTACCACTTCGTGGTACAATCACAGCTTCTGGAGATTTAGTTCCTCTTTCTTACATAGCTGGTTTGCTAACTGGCCGACCTAACTCCAAAGCTGTTGGACCCTCTGGAGAGGTACTTAATGCCAAGGAAGCTTTCCAATTGGCTGGCATCAATTCTGACTTCTTTGAATTACAGCCCAAGGAAGGTCTTGCTCTTGTTAATGGCACCGCCGTTGGTTCTGGCTTAGCTTCTGTGGTTCTCTTTGAGGCAAACATTCTCGCTGTCTTGTCTGAAGTTCTTTCCGCTATTTTTGCCGAAGTGATGAATGGTAAACCTGAATTCACTGACAACTTGACTCATAAGCTAAAGCACCACCCTGGTCAAATTGAAGCTGCTGCTATTATGGAGCATATTTTGGATGGAAGTTCCTACATGAAAGCTGCTAAGAAGTTGCATGAGATGGATCCTTTGCAAAAGCCAAAACATGATCGATATGCCCTTAGAACTTCTCCACAATGGCTTGGTCCTCTTATTGAAGTGATTCGTTTCTCAACCAAGTCAATTGAGAGAGAGATTAACTCTGTGAATGACAACCCTTTGATTGATGTTTCCAGGAATAAGGCCTTGCATGGTGGTAACTTCCAAGGAACCCCTATTGGAGTCTCCATGGACAACACTCGTTTGGCTCTTGCATCAATTGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGATTTTTACAACAATGGGTTGCCTTCAAATCTCTCTGCTGGTAGAAATCCCAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCTTATTGCTCTGAACTCCAGTATCTTGCAAATCCAGTAACAAGCCATGTCCAAAGTGCTGAGCAGCACAACCAAGACGTGAACTCTTTGGGTTTGATTTCGTCTAGAAAAACAAACGAAGCTATTGACATCCTCAAGCTCATGTCTTCCACGTTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAAAACTCGGTCAAGAACACTGTGAGCCAAGTTTCCAAGAGGACTCTTACCACCGGTGTCAATGGAGAACTTCATCCTTCAAGATTTTGTGAAAAGGATTTGCTGAAGGTGGTTGATAGGGAGGATGTATTTACATATATTGATGACCCCTGCAGTGCTACATACCCACTGTTGCAAAAGCTCAGGCAAGTGCTTGTGGATCATGCATTAGTAAATGCTGAAAACGAGAGTAACTTGAACACGTCAATCTTTCAAAAGATTACAACTTTTGAGGAAGAGTTGAAGAATCTGTTGCCAAAGGAGGTTGAAAGTGCAAGGGCTGCATATGAGAGTGGGAATCCAGCAATTCCAAACAAGATCAATGAATGCAGATCATACCCACTATACAAGTTTGTGAGAGAGGAGTTGGGGGCTGCGTTGCTAACTGGAGAAAAGGTAATTTCACCAGGTGAGGAGTGTGACAAACTGTTCACAGCAATATGCCAGGGTAAAATTATTGATCCACTTCTGGAATGCCTTGGGGAGTGGAACGGTACTCCTCTTCCAATTTGTTAA 2136 0.4602 MEPTTLTTSGQHLCLTEATDPLNWDVTAESLKGSHLDEVKRMVAEYRKPVIRLGGQTLTISQVAAIAADDQRVRVELSELARAGVKASSEWVIDSMKNSTDSNGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTESCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKEAFQLAGINSDFFELQPKEGLALVNGTAVGSGLASVVLFEANILAVLSEVLSAIFAEVMNGKPEFTDNLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEMDPLQKPKHDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSAGRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEAIDILKLMSSTFLIALCQAIDLRHLEENLKNSVKNTVSQVSKRTLTTGVNGELHPSRFCEKDLLKVVDREDVFTYIDDPCSATYPLLQKLRQVLVDHALVNAENESNLNTSIFQKITTFEEELKNLLPKEVESARAAYESGNPAIPNKINECRSYPLYKFVREELGAALLTGEKVISPGEECDKLFTAICQGKIIDPLLECLGEWNGTPLPIC 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00034 711 Gene3D - 13 257 IPR024083 -
Gabi4483g00034 711 PANTHER HISTIDINE AMMONIA-LYASE 20 711 IPR001106 -
Gabi4483g00034 711 FunFam Phenylalanine ammonia-lyase 258 566 - -
Gabi4483g00034 711 Pfam Aromatic amino acid lyase 58 534 IPR001106 -
Gabi4483g00034 711 CDD PAL-HAL 56 521 IPR001106 -
Gabi4483g00034 711 Gene3D - 524 645 IPR023144 -
Gabi4483g00034 711 Gene3D Fumarase/aspartase (Central domain) 258 705 - -
Gabi4483g00034 711 FunFam Phenylalanine ammonia-lyase 12 257 - -
Gabi4483g00034 711 NCBIfam phenylalanine ammonia-lyase 20 700 IPR005922 GO:0005737|GO:0006559|GO:0016841
Gabi4483g00034 711 SUPERFAMILY L-aspartase-like 20 711 IPR008948 GO:0003824
Gabi4483g00034 711 FunFam Phenylalanine ammonia-lyase 524 645 - -
Gabi4483g00034 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 193 209 IPR022313 GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00034 Gabi-Chr4483 287869 290662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00034 18 711 Monolignol Biosynthesis Gene Families AT2G37040 83.141 0.0 1229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00034 K10775 - gmx:100811101 1260.74