Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00033 ATGGAACAAACCACCGTGACCAATGGCAACCACCAAAGCCAAAATGGTTCATTTTGCTTGACTAGCTCTATTGCTACTAAAGGCAGCGACCCACTTAACTGGGGTTTGGCTGCTGAGTCACTCAAGGGGAGCCACCTCGATGAGGTGAAGCGAATGGTGGCGGAGTATCGGAAGCCGGTGGTCCGGCTAGGCGGCGAGACACTCACGATCTCCCAGGTGGCTGCTATCGCCGCCCACGACCACGGCGTGAGGGTGGAGCTTTCGGAATCGGCGAGGGCTGGCGTTAAGGCCAGCAGTGACTGGGTTATGGATAGCATGAACAACGGCACTGACAGCTATGGCGTCACCACAGGGTTCGGTGCCACCTCACACCGCCGAACCAAACAAGGTGGTGCTTTGCAGAAAGAGCTCATCAGGTTTTTGAACGCTGGAATATTTGGCAACGGAACAGAGTCATGCCACACACTGCCACACTCTGCAACTAAAGCAGCCATGCTAGTGAGAATAAACACACTTCTCCAAGGGTACTCAGGCATTAGATTTGAAATCTTAGAAGCCATCACCAAGTTCCTCAACAACAACGTTACCCCATGTTTACCACTTCGTGGTACAATCACAGCTTCTGGAGATTTAGTTCCTCTTTCTTACATAGCTGGTTTGCTAACTGGCCGACCTAACTCCAAAGCTGTTGGACCCTCTGGAGAGGTACTTAATGCCAAGGAAGCTTTCCAATTGGCTGGCATCAATTCTGAGTTCTTTGAATTACAGCCCAAGGAAGGTCTTGCTCTTGTTAATGGCACCGCCGTTGGTTCTGGCTTAGCTTCTGTGGTTCTCTTTGAGGCAAACATTCTCGCTGTCTTGTCTGAAGTTCTTTCTGCTATTTTTGCCGAAGTGATGAATGGCAAACCTGAATTCACTGACCATTTGACTCACAAGCTAAAGCACCACCCTGGTCAAATTGAAGCTGCTGCTATTATGGAGCACATTTTGGATGGAAGTTCCTACATGAAAGCTGCTAAGAAGTTGCATGAGATGGATCCTTTGCAAAAGCCAAAACAAGATCGATATGCCCTTAGAACTTCCCCACAATGGCTTGGTCCTCTTATTGAAGTGATTCGTTTCTCAACCAAGTCAATTGAGAGAGAGATTAACTCTGTGAATGACAACCCTTTGATTGATGTTTCCAGGAATAAGGCCTTGCATGGTGGTAACTTCCAAGGAACCCCTATTGGAGTCTCCATGGACAACACTCGTTTGGCTCTTGCATCAATTGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGATTTTTACAACAATGGGTTGCCTTCAAATCTCTCTGCTGGTAGAAATCCCAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCTTATTGCTCTGAACTCCAATATCTTGCAAATCCAGTAACAAGCCATGTCCAAAGTGCTGAGCAGCACAACCAAGACGTTAACTCTTTGGGTTTGATTTCGTCTAGAAAAACAAACGAAGCTATTGACATTCTCAAGCTCATGTCTTCCACGTTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAAAACTCGGTCAAGAACACTGTGAGCCAAGTTTCCAAGAGGACTCTCACCACCGGTGTCAATGGAGAACTTCATCCTTCAAGATTTTGTGAAAAGGATTTGCTGAAGGTGGTTGATAGGGAGGATGTATTTACATATATTGATGACACCTGCAGTGCTACATACCCACTGTTGCAAAAGCTCAGGCAAGTGCTTGTGGATCATGCATTAGTAAATGCTGAAAACGAGAGTAACTTGAACACGTCAATCTTTCAAAAGATTACAACTTTTGAGGAAGAGTTGAAGAATCTGTTGCCAAAGGAGGTTGAAAGTGCAAGGGCTGCATATGAGAGTGGGAATCCAGCAATTCCAAACAAGATCAATGAATGCAGATCATACCCACTATACAAGTTTGTGAGAGAGGAGTTGGGGGCTGCGTTGCTAACTGGAGAAAAGGTAATTTCACCAGGTGAGGAGTGTGACAAACTGTTCACAGCAATATGCCAGGGTAAAATCATTGATCCACTTCTGGAATGCCTTGGGGAGTGGAACGGTGCTCCTCTTCCAATTTGTTAA 2166 0.4594 MEQTTVTNGNHQSQNGSFCLTSSIATKGSDPLNWGLAAESLKGSHLDEVKRMVAEYRKPVVRLGGETLTISQVAAIAAHDHGVRVELSESARAGVKASSDWVMDSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESCHTLPHSATKAAMLVRINTLLQGYSGIRFEILEAITKFLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKEAFQLAGINSEFFELQPKEGLALVNGTAVGSGLASVVLFEANILAVLSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSAGRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEAIDILKLMSSTFLIALCQAIDLRHLEENLKNSVKNTVSQVSKRTLTTGVNGELHPSRFCEKDLLKVVDREDVFTYIDDTCSATYPLLQKLRQVLVDHALVNAENESNLNTSIFQKITTFEEELKNLLPKEVESARAAYESGNPAIPNKINECRSYPLYKFVREELGAALLTGEKVISPGEECDKLFTAICQGKIIDPLLECLGEWNGAPLPIC 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00033 721 Pfam Aromatic amino acid lyase 68 544 IPR001106 -
Gabi4483g00033 721 Gene3D - 534 655 IPR023144 -
Gabi4483g00033 721 FunFam Phenylalanine ammonia-lyase 21 267 - -
Gabi4483g00033 721 NCBIfam phenylalanine ammonia-lyase 30 710 IPR005922 GO:0005737|GO:0006559|GO:0016841
Gabi4483g00033 721 FunFam Phenylalanine ammonia-lyase 268 578 - -
Gabi4483g00033 721 Gene3D Fumarase/aspartase (Central domain) 268 716 - -
Gabi4483g00033 721 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 203 219 IPR022313 GO:0016841
Gabi4483g00033 721 PANTHER HISTIDINE AMMONIA-LYASE 23 721 IPR001106 -
Gabi4483g00033 721 Gene3D - 21 267 IPR024083 -
Gabi4483g00033 721 FunFam Phenylalanine ammonia-lyase 534 655 - -
Gabi4483g00033 721 CDD PAL-HAL 66 531 IPR001106 -
Gabi4483g00033 721 SUPERFAMILY L-aspartase-like 30 721 IPR008948 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00033 Gabi-Chr4483 274357 277850 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00033 8 721 Monolignol Biosynthesis Gene Families AT2G37040 82.271 0.0 1254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00033 K10775 - gmx:100811101 1309.28