Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00032 ATGAACTTGGATGAAAGAAGTTATAACGACCCACTTAACTGGGGTTTGGCTGCTGAGTCACTCAAGGGGAGCCACCTCGATGAGGTGAAGCGAATGGTGGCGGAGTATCGGAAGCCGGTGGTCCGGCTAGGCGGCGAGACACTCACGATCTCCCAGGTGGCTGCTATCGCCGCCCACGACCACGGCGTGAGGGTGGAGCTTTCGGAATCGGCGAGGGCTGGCGTTAAGGCCAGCAGTGACTGGGTTATGGATAGCATGAACAACGGCACTGACAGCTATGGCGTCACCACAGGGTTCGGTGCCACCTCACACCGCCGAACCAAACAAGGTGGTGCTTTGCAGAAAGAGCTCATCAGGTTTTTGAACGCTGGAATATTTGGCAACGGAACAGAGTCATGCCACACACTGCCACACTCTGCAACTAAAGCAGCCATGCTAGTGAGAATAAACACACTTCTCCAAGGGTACTCAGGCATTAGATTTGAAATCTTAGAAGCCATCACCAAGTTCCTCAACAACAACGTTACCCCATGTTTACCACTTCGTGGTACAATCACAGCTTCTGGAGATTTAGTTCCTCTTTCTTACATAGCTGGTTTGCTAACTGGCCGACCTAACTCCAAAGCTGTTGGACCCTCTGGAGAGGTACTTAATGCCAAGGAAGCTTTCCAATTGGCTGGCATCAATTCTGAGTTCTTTGAATTACAGCCCAAGGAAGGTCTTGCTCTTGTTAATGGCACCGCCGTTGGTTCTGGCTTAGCTTCTGTGGTTCTCTTTGAGGCAAACATTCTCGCTGTCTTGTCTGAAGTTCTTTCTGCTATTTTTGCCGAAGTGATGAATGGCAAACCTGAATTCACTGACCATTTGACTCACAAGCTAAAGCACCACCCTGGTCAAATTGAAGCTGCTGCTATTATGGAGCACATTTTGGATGGAAGTTCCTACATGAAAGCTGCTAAGAAGTTGCATGAGATGGATCCTTTGCAAAAGCCAAAACAAGATCGATATGCCCTTAGAACTTCCCCACAATGGCTTGGTCCTCTTATTGAAGTGATTCGTTTCTCAACCAAGTCAATTGAGAGAGAGATTAACTCTGTGAATGACAACCCTTTGATTGATGTTTCCAGGAATAAGGCCTTGCATGGTGGTAACTTCCAAGGAACCCCTATTGGAGTCTCCATGGACAACACTCGTTTGGCTCTTGCATCAATTGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGATTTTTACAACAATGGGTTGCCTTCAAATCTCTCTGCTGGTAGAAATCCCAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCTTATTGCTCTGAACTCCAATATCTTGCAAATCCAGTAACAAGCCATGTCCAAAGTGCTGAGCAGCACAACCAAGACGTTAACTCTTTGGGTTTGATTTCGTCTAGAAAAACAAACGAAGCTATTGACATTCTCAAGCTCATGTCTTCCACGTTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAAAACTCGGTCAAGAACACTGTGAGCCAAGTTTCCAAGAGGACTCTCACCACCGGTGTCAATGGAGAACTTCATCCTTCAAGATTTTGTGAAAAGGATTTGCTGAAGGTGGTTGATAGGGAGGATGTATTTACATATATTGATGACACCTGCAGTGCTACATACCCACTGTTGCAAAAGCTCAGGCAAGTGCTTGTGGATCATGCATTAGTAAATGCTGAAAACGAGAGTAACTTGAACACGTCAATCTTTCAAAAGATTACAACTTTTGAGGAAGAGTTGAAGAATCTGTTGCCAAAGGAGGTTGAAAGTGCAAGGGCTGCATATGAGAGTGGGAATCCAGCAATTCCAAACAAGATCAATGAATGCAGATCATACCCACTATACAAGTTTGTGAGAGAGGAGTTGGGGGCTGCGTTGCTAACTGGAGAAAAGGTAATTTCACCAGGTGAGGAGTGTGACAAACTGTTCACAGCAATATGCCAGGGTAAAATCATTGATCCACTTCTGGAATGCCTTGGGGAGTGGAACGGTGCTCCTCTTCCAATTTGTTAA 2106 0.4577 MNLDERSYNDPLNWGLAAESLKGSHLDEVKRMVAEYRKPVVRLGGETLTISQVAAIAAHDHGVRVELSESARAGVKASSDWVMDSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESCHTLPHSATKAAMLVRINTLLQGYSGIRFEILEAITKFLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKEAFQLAGINSEFFELQPKEGLALVNGTAVGSGLASVVLFEANILAVLSEVLSAIFAEVMNGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSAGRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEAIDILKLMSSTFLIALCQAIDLRHLEENLKNSVKNTVSQVSKRTLTTGVNGELHPSRFCEKDLLKVVDREDVFTYIDDTCSATYPLLQKLRQVLVDHALVNAENESNLNTSIFQKITTFEEELKNLLPKEVESARAAYESGNPAIPNKINECRSYPLYKFVREELGAALLTGEKVISPGEECDKLFTAICQGKIIDPLLECLGEWNGAPLPIC 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00032 701 FunFam Phenylalanine ammonia-lyase 3 247 - -
Gabi4483g00032 701 Gene3D - 514 635 IPR023144 -
Gabi4483g00032 701 FunFam Phenylalanine ammonia-lyase 514 635 - -
Gabi4483g00032 701 Pfam Aromatic amino acid lyase 48 524 IPR001106 -
Gabi4483g00032 701 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 183 199 IPR022313 GO:0016841
Gabi4483g00032 701 Gene3D - 3 247 IPR024083 -
Gabi4483g00032 701 SUPERFAMILY L-aspartase-like 10 701 IPR008948 GO:0003824
Gabi4483g00032 701 FunFam Phenylalanine ammonia-lyase 248 558 - -
Gabi4483g00032 701 Gene3D Fumarase/aspartase (Central domain) 248 696 - -
Gabi4483g00032 701 PANTHER HISTIDINE AMMONIA-LYASE 10 701 IPR001106 -
Gabi4483g00032 701 NCBIfam phenylalanine ammonia-lyase 10 690 IPR005922 GO:0005737|GO:0006559|GO:0016841
Gabi4483g00032 701 CDD PAL-HAL 46 511 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00032 Gabi-Chr4483 267952 277850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00032 10 701 Monolignol Biosynthesis Gene Families AT2G37040 84.827 0.0 1250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00032 K10775 - gmx:100811101 1288.48