Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00026 ATGATTTTTTGTGGACAAGTGGCACAGATTCTTGTGTTTTCAGCTTTGTTGCGATCATATATGCTTTTTCAGGAATTTTGCAGTGGAAAAAGTTGCTATTTAGCTCCAACTGAGATGATGACGTGTGAGGAGTCAAAAGAGAAATCGAAAGAGATGGAAAAGTGTTTGGATCCTCAACTATGGCATGCTTGTGCGGGAGGGATGGTGCAAATGCCAACGGTGAACGCTAAGGTCTTCTACTTCCCCCAGGGCCACGCTGAACATGCATGTGGACCCGTGGACTTCAGGGCTTACCCCAAAATTCGACCTTTCATTCAATGCAGAGTAGCAGCTATCAAATACATGGCTGATCCTGAAACAGACGAGGTGTATGCTAAACTTAGGCTTGTTCCTCTGAACAATAATGATGCTGCTGATTTTGAGGATGATGGTGTTGGAGGCATCAATGGGTGTGAAACAAAGGACAAACCCGCTTCCTTTGCAAAAACCTTGACGCAATCTGATGCCAACAATGGTGGTGGCTTTTCTGTTCCTAGATTTTGTGCAGAGACAATTTTTCCTCGCTTAGACTATATAGCGGATCCTCCTGTTCAAAACATCCTTGCCAGAGACGTTCATGGCGAAACATGGAAATTCAGGCACATTTATAGGGGCACGCCACGGCGGCATCTGTTGACAACTGGTTGGAGTACTTTTGTCAACAACAAGAAGCTTGTTGCAGGGGATTCAATTGTGTTTTTAAGAGCAGAAAATGGGGATCTACGTGTTGGAATTCGGCGGGCTAAAAGGGGAAACTATGGTGGACCTGAGGGTTCATCAGGGTGGAATCCAGGAGGTGGAATTCGCCCTGTACCTTATGGTGTATTTTCGGCCTTTTTGAGAGAGGATGATAACCAGCTCCTTGGAAATGGTAATGGCAATGGATTGAGCTCAAATGCAAGCTTGATGGGTAGAGGGAAAGTAAGGGCCGAAGCTGTTATTGAAGCTGCAACACTTGCCACCAATGAGCAACCCTTTGAGGTTGTTTACTACCCTCGGGCAAGTACTCCTGAGTTTTGTGTTAAGGCCTCGTTGGTTAGAGCAGCACTGCAGATTAGGTGGTGTCCTGGAATGAGGTTCAAGATGCCCTTTGAAACTGAGGACTCCTCGCGGATAAGTTGGTTTATGGGTACCATATCTTCTGTTCAGGTTGCCGATCCTAGATGGCCTGACTCTCCTTGGAGACTTCTCCAGGTTACATGGGATGAACCAGAGTTACTTCAAAATGTAAAAAGGGTGAACCCTTGGTTGGTTGAATTGGTATCAAACATGCCTACCATCCATCTTTCCCCTTTCTCACCACCACGGAAGAAATTGAGATTACCTCAAAACCCATATTTTCCCTTCGATGACCAGATTTCAGTGCCAACATTTCCCAGCAACCCCTTTGGTTGTCTCCCTGAAACTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTATATCCTTATCGGATCTGCACTTCAATAAACTGCACTCAGGTCTATTACAGATTGGTTTCCCGGGTTTCCAGCCACTTGATCACACTGCTACACCAATGAGGGTCTCCAATAACCCAGCATTGCAAAAGCCCAACACAACTGAAAACATCTCTTGCCTACTATCCATGTCAAGTTCTCCTGAGTCTTCGAAAAAACTGAATGATGTTAAGGCTCCCCAGCTTGTGCTTTTTGGCCAAACAATTCTCACCAAGCAGCAGATGTCTATGAACACCTCTGCTGATGCAGTAACCCCAGTTCTTAATGGTAATACTTCATCTGACGGAAATGCTGATAAAATGACTATTTTTTCGGATGGTTCAGGTTCTGCTCTTCATCAACAAGGCCTACTAGAACGCTCTTCTTGTGAGAGGTTCCATAATTATAAGGATGCTAGTTTGGAGACAGGTCAATGTAAAGTTTTTATGGAATCAGAAGATGTAGGTCGGACACTAGACCTCTCATTGCTTGGGTCTTACAATGAACTGTACAGAAAACTTGCAGACATGTTTTGCATAAAAAAACCGGAGGTGCTAAGTCATGTGCTTTACAGTGATATGAATGGGGCAGTCAAACACATTGGAGATGAACCATTCAGGGACTTCACCAAAACTGCCAAGAGGTTGAACATTCTAATGGATTCCAACGGAGACAATAGAAGAGTGTAG 2193 0.4482 MIFCGQVAQILVFSALLRSYMLFQEFCSGKSCYLAPTEMMTCEESKEKSKEMEKCLDPQLWHACAGGMVQMPTVNAKVFYFPQGHAEHACGPVDFRAYPKIRPFIQCRVAAIKYMADPETDEVYAKLRLVPLNNNDAADFEDDGVGGINGCETKDKPASFAKTLTQSDANNGGGFSVPRFCAETIFPRLDYIADPPVQNILARDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNNKKLVAGDSIVFLRAENGDLRVGIRRAKRGNYGGPEGSSGWNPGGGIRPVPYGVFSAFLREDDNQLLGNGNGNGLSSNASLMGRGKVRAEAVIEAATLATNEQPFEVVYYPRASTPEFCVKASLVRAALQIRWCPGMRFKMPFETEDSSRISWFMGTISSVQVADPRWPDSPWRLLQVTWDEPELLQNVKRVNPWLVELVSNMPTIHLSPFSPPRKKLRLPQNPYFPFDDQISVPTFPSNPFGCLPETTPAGMQGARHAHYGISLSDLHFNKLHSGLLQIGFPGFQPLDHTATPMRVSNNPALQKPNTTENISCLLSMSSSPESSKKLNDVKAPQLVLFGQTILTKQQMSMNTSADAVTPVLNGNTSSDGNADKMTIFSDGSGSALHQQGLLERSSCERFHNYKDASLETGQCKVFMESEDVGRTLDLSLLGSYNELYRKLADMFCIKKPEVLSHVLYSDMNGAVKHIGDEPFRDFTKTAKRLNILMDSNGDNRRV 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00026 730 Pfam B3 DNA binding domain 160 261 IPR003340 GO:0003677
Gabi4483g00026 730 Gene3D - 366 439 - -
Gabi4483g00026 730 ProSiteProfiles PB1 domain profile. 644 727 IPR000270 GO:0005515
Gabi4483g00026 730 Pfam Auxin response factor 329 411 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi4483g00026 730 Gene3D - 642 727 - -
Gabi4483g00026 730 Gene3D - 158 262 IPR015300 -
Gabi4483g00026 730 ProSiteProfiles B3 DNA-binding domain profile. 160 262 IPR003340 GO:0003677
Gabi4483g00026 730 SMART B3_2 160 262 IPR003340 GO:0003677
Gabi4483g00026 730 CDD B3_DNA 159 260 IPR003340 GO:0003677
Gabi4483g00026 730 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 52 722 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi4483g00026 730 FunFam Auxin response factor 367 439 - -
Gabi4483g00026 730 FunFam Auxin response factor 158 262 - -
Gabi4483g00026 730 SUPERFAMILY DNA-binding pseudobarrel domain 154 263 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00026 Gabi-Chr4483 173041 177007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00026 53 727 B3 DNA Binding Superfamily AT4G30080 58.357 0.0 725
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi4483g00026 B3 4.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00026 - - cave:132192247 1059.28