Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00025 ATGGCAAAAGACACCGAGACTGCGGCACACAGTGGGTTGACACACAAGGACTACCGCGACCCACCACCGGCGCCACTGTTCGACGCCACCGAGCTCCGCAAATGGTCCTTCTATAGGGCCGTCATAGCCGAGTTTGTCGCCACTCTCCTCTTCCTCTACATCACCGTTTTGACCGTTATTGGTTACAACAACCAGACGCATGGCGGCGACCCTTGTGGCGGCGTTGGCATCCTCGGCATCGCTTGGTCCTTCGGCGGCATGATTTTTGTCCTCGTCTACTGCACCGCTGGCATATCCGGGGGTCACATAAACCCGGCGGTGACGTTCGGGTTGTTTCTGGCACGGAAGGTATCGCTGCTTAGAGCTATTTCGTATATGGTGGCACAGTGCTTGGGTGCCATATGTGGTGTTGGGTTGGTGAAGGCTTTTCAGAAGAGCTACTACAACAGGTACAATGGTGGTGCCAACATGCTCGCTGATGGCTACAGTAAAGGCACTGGCTTGGGCGCTGAAATTATTGGTACCTTTTTTCTTGTCTACACCGTCTTCTCTGCCACCGATCCCAAGAGAAAAGCCAGAGACTCCCATGTTCCCGTGTTGGCACCACTTCCAATTGGGTTTGCAGTGTTTATGGTTCACCTAGCCACCATCCCTATCACCGGCACTGGCATTAACCCTGCTAGAAGCCTTGGACCTGCTGTCATATTCAACAATGAAAAGGCATGGGATAACCATGTATTGGATCTTCTGGGTCGGACCCTTCATCGGTGCTGCAATTGCTGCTATCTACCACCAGTATGTGTTGAGAGCCCAAGTTGCTAA 822 0.5292 MAKDTETAAHSGLTHKDYRDPPPAPLFDATELRKWSFYRAVIAEFVATLLFLYITVLTVIGYNNQTHGGDPCGGVGILGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRAISYMVAQCLGAICGVGLVKAFQKSYYNRYNGGANMLADGYSKGTGLGAEIIGTFFLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGPAVIFNNEKAWDNHVLDLLGRTLHRCCNCCYLPPVCVESPSC 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00025 273 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 257 IPR034294 -
Gabi4483g00025 273 FunFam Probable aquaporin PIP1-2 24 269 - -
Gabi4483g00025 273 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Gabi4483g00025 273 SUPERFAMILY Aquaporin-like 31 243 IPR023271 -
Gabi4483g00025 273 CDD MIP 39 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00025 273 Gene3D Glycerol uptake facilitator protein. 24 258 IPR023271 -
Gabi4483g00025 273 NCBIfam MIP family channel protein 43 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00025 273 Pfam Major intrinsic protein 31 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00025 273 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00025 273 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00025 273 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00025 273 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00025 273 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00025 Gabi-Chr4483 145888 147647 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00025 1 251 Major Intrinsic Protein MIP AT3G53420 79.134 1.09e-144 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00025 K09872 - vvi:100233002 436.032