Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00024 ATGGCAAAAGACACCGAGACTGCGGCACACAGTGGGTTGACACACAAGGACTACCGCGACCCACCACCGGCGCCACTGTTCGACGCCACCGAGCTCCGCAAATGGTCCTTCTATAGGGCCGTCATAGCCGAGTTTGTCGCCACTCTCCTCTTCCTCTACATCACCGTTTTGACCGTTATTGGTTACAACAACCAGACGCATGGCGGCGACCCTTGTGGCGGCGTTGGCATCCTCGGCATCGCTTGGTCCTTCGGCGGCATGATTTTTGTCCTCGTCTACTGCACCGCTGGCATATCCGGGGGTCACATAAACCCGGCGGTGACGTTCGGGTTGTTTCTGGCACGGAAGGTATCGCTGCTTAGAGCTATTTCGTATATGGTGGCACAGTGCTTGGGTGCCATATGTGGTGTTGGGTTGGTGAAGGCTTTTCAGAAGAGCTACTACAACAGGTACAATGGTGGTGCCAACATGCTCGCTGATGGCTACAGTAAAGGCACTGGCTTGGGCGCTGAAATTATTGGTACCTTTTTTCTTGTCTACACCGTCTTCTCTGCCACCGATCCCAAGAGAAAAGCCAGAGACTCCCATGTTCCCGTGTTGGCACCACTTCCAATTGGGTTTGCAGTGTTTATGGTTCACCTAGCCACCATCCCTATCACCGGCACTGGCATTAACCCTGCTAGAAGCCTTGGACCTGCTGTCATATTCAACAATGAAAAGGCATGGGATAACCATTGGATCTTCTGGGTCGGACCCTTCATCGGTGCTGCAATTGCTGCTATCTACCACCAGTATGTGTTGAGAGCCCAAGTTGCTAAGGCTCTGGGTTCTTTCAGGAGCTCCTCAAACCTGTAA 855 0.5298 MAKDTETAAHSGLTHKDYRDPPPAPLFDATELRKWSFYRAVIAEFVATLLFLYITVLTVIGYNNQTHGGDPCGGVGILGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRAISYMVAQCLGAICGVGLVKAFQKSYYNRYNGGANMLADGYSKGTGLGAEIIGTFFLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGPAVIFNNEKAWDNHWIFWVGPFIGAAIAAIYHQYVLRAQVAKALGSFRSSSNL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00024 284 FunFam Probable aquaporin PIP1-2 24 282 - -
Gabi4483g00024 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 271 IPR034294 -
Gabi4483g00024 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Gabi4483g00024 284 Gene3D Glycerol uptake facilitator protein. 24 284 IPR023271 -
Gabi4483g00024 284 Pfam Major intrinsic protein 31 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00024 284 SUPERFAMILY Aquaporin-like 31 268 IPR023271 -
Gabi4483g00024 284 NCBIfam MIP family channel protein 43 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00024 284 CDD MIP 39 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00024 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00024 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00024 284 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00024 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00024 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4483g00024 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00024 Gabi-Chr4483 145871 147647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00024 1 284 Major Intrinsic Protein MIP AT3G53420 80.139 1.31e-169 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00024 K09872 - gmx:100807883 501.901