Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00020 ATGGGCAACATCTCTAGCAGCGGCGGTAACAACCGTCGCCGACACGGTGGCGGTTCCAGGCGGAGTCATCCGCCGCCCCCTCCGCCGGTGACGCCGCAGCCCGAAATCACGGCCAATCCATTTGTGTACACCGGCGCTGCACCGTACCCGAACCCTGCACTGCATTACCCACAATACCCTTACCCAGGTTACTATCCCTCGATGCCTCTGCCCCATCATCCTCACCATCATCATCATCATCATCCACATCCACATCCACACATGGACCCAGCGTGGCGTTGCCCTTGTGGACCTGCCATGCCTTCGCCTGCACCCTTTGTTGAGCATCAAAAGGCCGTTACCATAAGGAACGATGTCAATATCAAGAAGGAGACCCTTAGGGTTGAACCTGATGAGGAAAACCCTGGTCACTTCCTTGTGTCATTTACATTTGATGCCATGGTTTCTGGGAGCATCACCATATTTTTCTTTGCAAAAGAAGTTGAAGGCTGCAACCTCGCACCAATGAAGGAAAATCATCTTCCACCTGTGAGTGTGGATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAGCCAGCTGGAACTGGTATTAATTTTTCAATGTTTGACGAGTCAGAGTTATTGAAAGTGGGTGACATGGATGTTTACCCTCTAGCAGTGAAGGCAGATGCTTCCTCTGGTAATCAGGATGGATCAAGTGAAACCTCAACATCTAGTAACACAAACTCTCAGATAACCCAAGCGGTGTTTGAGAAGGACAAAGGAGAATTCCGGGTGAAAGTTGTTAAGCAGATCTTGTGGGTAAATGGAATGAGGTATGAGCTGCACGAAATATATGGTATTGGAAATTCAGTGGAGAGTGGCTTGGATGAGAATGACCAAGGAAAAGAGTGCGTCATCTGCTTGTCGGAGCCTCGTGATACAATTGTCTACCCCTGCCGACATATGTGCATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTTCAGACAAACAAATGCCCAATTTGCAGACAACCAGTTGAGAGACTTTGGGAGATAAAGGTAGGGTCTGAGGAGTGA 1059 0.491 MGNISSSGGNNRRRHGGGSRRSHPPPPPPVTPQPEITANPFVYTGAAPYPNPALHYPQYPYPGYYPSMPLPHHPHHHHHHHPHPHPHMDPAWRCPCGPAMPSPAPFVEHQKAVTIRNDVNIKKETLRVEPDEENPGHFLVSFTFDAMVSGSITIFFFAKEVEGCNLAPMKENHLPPVSVDFQQGLGQKFRQPAGTGINFSMFDESELLKVGDMDVYPLAVKADASSGNQDGSSETSTSSNTNSQITQAVFEKDKGEFRVKVVKQILWVNGMRYELHEIYGIGNSVESGLDENDQGKECVICLSEPRDTIVYPCRHMCMCSGCAKVLRFQTNKCPICRQPVERLWEIKVGSEE 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00020 352 MobiDBLite consensus disorder prediction 1 37 - -
Gabi4483g00020 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 346 IPR013083 -
Gabi4483g00020 352 Pfam Zinc finger, C3HC4 type (RING finger) 296 342 - -
Gabi4483g00020 352 MobiDBLite consensus disorder prediction 21 35 - -
Gabi4483g00020 352 MobiDBLite consensus disorder prediction 224 244 - -
Gabi4483g00020 352 SMART ring_2 298 336 IPR001841 -
Gabi4483g00020 352 FunFam probable E3 ubiquitin-protein ligase LOG2 282 347 - -
Gabi4483g00020 352 MobiDBLite consensus disorder prediction 225 244 - -
Gabi4483g00020 352 SUPERFAMILY RING/U-box 297 342 - -
Gabi4483g00020 352 CDD mRING-HC-C3HC5_MGRN1-like 296 337 IPR045195 -
Gabi4483g00020 352 PANTHER MAHOGUNIN 1 347 IPR045194 GO:0061630
Gabi4483g00020 352 ProSiteProfiles Zinc finger RING-type profile. 298 337 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00020 Gabi-Chr4483 107612 112371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00020 96 317 C3H Transcription Factor Family AT3G09770 63.596 1.73e-98 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00020 - - aprc:113862864 539.65