Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00018 ATGTTTCGTATAGTTCCTACCACTCCACCGTTGGCTGAGAGTATTATTGACACAACATCTACAAAATATCCACCTGAATATACTGTTGAAAATGAGGATAGCGAAGATATTCCTGAAGAAGAAGCTGTCTGCAGAATTTGTTTGATTGAATTGAGAGAAGTTGCTAATACCCTTAAAATAGAGTGCAGCTGCAAAGGTGAACTTGCTCTGGCACACCAAGAGTGTGCAGTTAAATGGTTTAGCATTAAAGGCAATAGAACATGTGATGTGTGCAAGCAGGAAGTTCAGAACCTACCTGTTACTCTTTTACGGGTTCCTAGTGACCGGGAACTTAACTTGATAGGGAGCAGAGATCAACTAAACAGGTATTGGCAAATAGTTTCCATTCTTGTCATAATCAACACGCTGGCTTACTTCTGTTTTCTTGAGCAGCTCCTTGTCACAAATATGGGATCTGGTGCCATTGCCATATCTCTCCCATTTTCTTGTGTACTGGGTCTTCTTGCAAGCGCCACGTCCTCAACAATGGTCAGGAGAAAACATGTTTGGGTTTATGCAATTGGCCAGTTTATTATGATGGTTCTCGCTGGATGTCTTTTCTACTCACTGCTTCATATGCAAGCTGTTCCATCTATTCTACTTGCTACATTTACTGGGTTTGGAGCTGTTGAGTTTTTAAAATGGGGGAGACGATGGCTTTGTCAACTGAATCAACAACATGAATCCCAAGAAATGTTATCACCTGATCAATCATCTGCAACCCCTCATCAGGCTCAGATTGATTCTCAACATCATGAAACTAATAGGCAAGCTCTGCAGCTTGTGAGCTAA 831 0.414 MFRIVPTTPPLAESIIDTTSTKYPPEYTVENEDSEDIPEEEAVCRICLIELREVANTLKIECSCKGELALAHQECAVKWFSIKGNRTCDVCKQEVQNLPVTLLRVPSDRELNLIGSRDQLNRYWQIVSILVIINTLAYFCFLEQLLVTNMGSGAIAISLPFSCVLGLLASATSSTMVRRKHVWVYAIGQFIMMVLAGCLFYSLLHMQAVPSILLATFTGFGAVEFLKWGRRWLCQLNQQHESQEMLSPDQSSATPHQAQIDSQHHETNRQALQLVS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00018 276 SMART ringv_2 43 92 IPR011016 GO:0008270
Gabi4483g00018 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 100 IPR013083 -
Gabi4483g00018 276 ProSiteProfiles Zinc finger RING-CH-type profile. 36 98 IPR011016 GO:0008270
Gabi4483g00018 276 CDD RING_CH-C4HC3_MARCH 44 92 - -
Gabi4483g00018 276 SUPERFAMILY RING/U-box 40 95 - -
Gabi4483g00018 276 PANTHER OS02G0165000 PROTEIN 2 246 - -
Gabi4483g00018 276 Pfam RING-variant domain 44 91 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00018 Gabi-Chr4483 88454 91019 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00018 29 111 C3H Transcription Factor Family AT2G37950 35.632 8.99e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00018 - - lang:109334761 349.362