Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00014 ATGGGTAGTCTTATCGGTTTCTCGTTGCTCAACATGGATTCGGTGGCGTGCAGGGGATTGCTCTACACATTCTTCATACTCAATTTTGTTTTGGTCTGCCAACTCATTCTCCTTCAACCTCTTGTTTCTGCTTCAGGTGGAAAATCTGGAAATGCTGCTGAATTGTTTGAGAGGGCATCACAAAGTATAAAAGTGAAACATTATACTGAGGCACTTGATGATCTGAATGCTGCTATAGAAGCAGATCCAACCCTTTCAGAAGCTTACCTTTACCGTGCATCAGTTCTTCGTCAGTTATGTAGATATGAGCAATCTGAAAGGAGCTACAAAAAGTTTCTGGAGTTAAAACCTGGAGATTCAGCTGCAGAAAAGGAGCTCTCTCAGCTGTTGCAGGCTCAAAGTTCCCTAGAAACAGCTCAGTCCCTCTATGATTTGGGAAACTTCGCAAAATCTCTGGAATATATTGACAAAGTTGTTCTTGTTTTTTCTCCAGCATGCACTAAGGCTAAGCTTCTTAAAGTGAAGTTGTTGATAGCTGATAAAGAGTATGAGAGTGCCATTGCTGAGTCTGGGTTTATGCTCAAGGAAGATGAAAATAATTTAGAGGCATTGTTGTTACGTGGTCGTGCATATTACTATTTAGCTGATCATGATGTTGCCACGAGGCATTTCCAGAAAGGTCTCCGCCTAGATCCAGAGCACAGTGAGCTGAAAAAAGCATATTTCGGATTGAAAAATCTACTCAAAAAGAGTAAAAGTGCTGAAGATAATGCCAGCAAGGGTAAGCTACGAGTGGCAGTGGAGGAATTCAAAAGTGCACTGGCTGTTGACCCTAACCATCTAGCACATAATGTACATCTTCATCTTGGCTTATGTAAAGTGCTAGTCAAGCTTGGCAGAGGAAAAGACGCCTTGAACAGTTGTAGTGAAGCTCTTAAGATCAACGAGGAGCTGATTGAAGCACTCGTTCAGAGGGGAGAAGCTAAACTCATAACAGAGGATTGGGAGGGAGCTGTGGAGGATCTGAAATCAGCTGCTCAAAAATCTCCTCAGGATATGAATATCCGCGAAGCATTAATGAGGGCTGAAAAAGCTTTAAAGATGAGCAAACGCAAGGATTACTACAAAATTTTGGGAATTTCAAAAACTTCTTCCGCTGCTGATATAAAACGTGCCTACAAGAAGCTTGCCTTACAATGGCACCCAGATAAGAATGTTGACAATAGGGAAGAAGCAGAGGCTAAATTCCGAGAAATTGCTGCTGCATATGAGGTTCTCAGTGATGAAGACAAACGCACAAGGTATGACAGAGGGGAGGACCTAGAAGAAACGGGAATGGGTGGCGGCGGCGGCGGCGGCGGAGGTTTCAACCCCTTTGGTGGTGGAGGGCAGCAGTATACCTTCTCTTTTGAAGGTGGCTTCCCTGGTGGTGGATTTGGAGGTGGCTTTCCTGGCGGGTATGAATTTCATTTTTAA 1476 0.4363 MGSLIGFSLLNMDSVACRGLLYTFFILNFVLVCQLILLQPLVSASGGKSGNAAELFERASQSIKVKHYTEALDDLNAAIEADPTLSEAYLYRASVLRQLCRYEQSERSYKKFLELKPGDSAAEKELSQLLQAQSSLETAQSLYDLGNFAKSLEYIDKVVLVFSPACTKAKLLKVKLLIADKEYESAIAESGFMLKEDENNLEALLLRGRAYYYLADHDVATRHFQKGLRLDPEHSELKKAYFGLKNLLKKSKSAEDNASKGKLRVAVEEFKSALAVDPNHLAHNVHLHLGLCKVLVKLGRGKDALNSCSEALKINEELIEALVQRGEAKLITEDWEGAVEDLKSAAQKSPQDMNIREALMRAEKALKMSKRKDYYKILGISKTSSAADIKRAYKKLALQWHPDKNVDNREEAEAKFREIAAAYEVLSDEDKRTRYDRGEDLEETGMGGGGGGGGGFNPFGGGGQQYTFSFEGGFPGGGFGGGFPGGYEFHF 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00014 491 FunFam DnaJ domain containing protein 39 370 - -
Gabi4483g00014 491 SMART dnaj_3 372 431 IPR001623 -
Gabi4483g00014 491 ProSiteProfiles dnaJ domain profile. 373 439 IPR001623 -
Gabi4483g00014 491 SUPERFAMILY Chaperone J-domain 366 474 IPR036869 -
Gabi4483g00014 491 Pfam DnaJ domain 373 436 IPR001623 -
Gabi4483g00014 491 Pfam Tetratricopeptide repeat 202 234 IPR013105 -
Gabi4483g00014 491 MobiDBLite consensus disorder prediction 433 457 - -
Gabi4483g00014 491 Gene3D DnaJ domain 371 482 IPR036869 -
Gabi4483g00014 491 CDD DnaJ 373 428 IPR001623 -
Gabi4483g00014 491 FunFam DnaJ subfamily C member 7 371 482 - -
Gabi4483g00014 491 ProSitePatterns Nt-dnaJ domain signature. 416 435 IPR018253 -
Gabi4483g00014 491 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 23 491 IPR044620 -
Gabi4483g00014 491 Pfam Tetratricopeptide repeat 261 317 - -
Gabi4483g00014 491 Pfam Tetratricopeptide repeat 66 120 - -
Gabi4483g00014 491 SUPERFAMILY TPR-like 57 368 IPR011990 GO:0005515
Gabi4483g00014 491 Coils Coil 409 429 - -
Gabi4483g00014 491 ProSiteProfiles TPR repeat profile. 201 234 IPR019734 GO:0005515
Gabi4483g00014 491 PRINTS DnaJ domain signature 375 393 IPR001623 -
Gabi4483g00014 491 PRINTS DnaJ domain signature 431 450 IPR001623 -
Gabi4483g00014 491 PRINTS DnaJ domain signature 393 408 IPR001623 -
Gabi4483g00014 491 PRINTS DnaJ domain signature 411 431 IPR001623 -
Gabi4483g00014 491 ProSiteProfiles TPR repeat profile. 86 119 IPR019734 GO:0005515
Gabi4483g00014 491 SMART tpr_5 86 119 IPR019734 GO:0005515
Gabi4483g00014 491 SMART tpr_5 319 352 IPR019734 GO:0005515
Gabi4483g00014 491 SMART tpr_5 52 85 IPR019734 GO:0005515
Gabi4483g00014 491 SMART tpr_5 285 318 IPR019734 GO:0005515
Gabi4483g00014 491 SMART tpr_5 132 165 IPR019734 GO:0005515
Gabi4483g00014 491 SMART tpr_5 201 234 IPR019734 GO:0005515
Gabi4483g00014 491 Gene3D Tetratricopeptide repeat domain 44 370 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00014 Gabi-Chr4483 67661 72881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00014 369 436 C2H2 Transcription Factor Family AT1G74250 47.222 4.33e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00014 K09523 - gmx:100804685 780.015